HsaINT0186759 @ hg38
Intron Retention
Gene
ENSG00000167637 | ZNF283
Description
zinc finger protein 283 [Source:HGNC Symbol;Acc:HGNC:13077]
Coordinates
chr19:43827292-43828281:+
Coord C1 exon
chr19:43827292-43827444
Coord A exon
chr19:43827445-43828201
Coord C2 exon
chr19:43828202-43828281
Length
757 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GTTACTGTTTTTTCCCCCAGTGC
3' ss Score
9.52
Exon sequences
Seq C1 exon
CTTTTAGGGGCGGGGCGAGCTTGCCTGCCAGAAGCTCCTCTCCCAGCCTGCGAGCATTTCCAGGCTCTTGTTTCCCATCAGCCTCTGGGTCCAAACTAACCACAGGTCTCTGGGTCCTTTTCCGGTGTCCTTAAGGTTCTTGGACTCTGCATG
Seq A exon
GTGAGTTGGTCGTGTCTGTAGAAGTAATCAGCCCGGGTGAAGCTGGGAGGGCTCGGCTGGCTTTACTGGGGCCCGACTGGAACCGGCAGTGAGGGTGGGGGTGGCATCGGGGGTGCTGGAGGTGGGGAGGGCTGGGTCACGGACAGAGCGTGTCGTGTCCGGATCCTCAAGCCTGTGTGCACGCGAGCAGCCGAGGGACAGTGTGTCTCAGACGGCGTGGCAGGGACGGGGCGTGTCCCCACGGAGGTGGGTGCAGTTGTGAATGTGTGACGGGCTGACAGGGTGCGTGGCCGTATTTGTAAATGTGATTTGCTTTGACCAAATGCTCTAGGTTCCCTTTAGCCTGTCTTCGGGCCTGCCACAATTAAATGACCGCAAGAAAGAAGTCTATGCTAAGCCCCATAATGAACGTTTCAAGCAAGAAGGATGAGAATTTTAGATCTGGAAGTGTCCGCGGGACAGGATCTTGTCAAGACCTGATGGGGAAGTTCTAGAGGTGGGATTCCTAGAAGAGGGGCCTCTAGGAGCTCTTTGGTGGTGAGCTACATGTTTCAGAGCCATTGCAAGCAGACCTCTGTCCCCAAGAATTGCCCTCAACACAGAGACAGACTCTAGCCTCCCTTTTCATTCCGTTTGGTTTTGTGTGGATGAAGGCAGAAGTGGCCCCAGAGGGTGTTTTGCTCTTCTTTTTCTTTTTTAATTAAGTCTGTGACGCGCTAGAAATGCTGATGTCTCATGTTACTGTTTTTTCCCCCAG
Seq C2 exon
TGCTGCCAGGTTGCCAGATTTCTAAGAAGGAGTTTGAAGAGGAGAAAAGGATTTTTGCATGTTTAGAAATCAAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167637:ENST00000618787:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAGGGGCGGGGCGAG
R:
TGAACCTTGATTTCTAAACATGCA
Band lengths:
231-988
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains