HsaINT0186826 @ hg38
Intron Retention
Gene
ENSG00000130803 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr19:9155925-9156748:+
Coord C1 exon
chr19:9155925-9156041
Coord A exon
chr19:9156042-9156611
Coord C2 exon
chr19:9156612-9156748
Length
570 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
AACCCTGTTTTCTCCTCCAGCCA
3' ss Score
9.38
Exon sequences
Seq C1 exon
ATGCCAGCTTGGAGAGTCACGTGAGAGCAAGAGAGTAGCTTTCTGGTTGTCCTGGTGCCCTGCTCAGGCAAACTGACTGCCATTCTCTGAGGATGGCAGCTCTGTCCCCCACATTTG
Seq A exon
GTAAGTTCTTGGGTCAGTGCGTGCCCTGAGAAAGTGAGTGCAAGTGGCCCCTGCCACTTGATGGGGTGAAAGATACGTACACCATAGAGGGCTGCTGGGAGAGGATGGGCAAGTGGAAAAGGGGTGGGAACAGAGCCCCAGCAGCCACCCCAGTGACTGTGTCTGCTGAGGGTCTTGGTGGGTCTGGGAGCAGGCCAGTGTCCTTATCATTCATGCATGAAGAGGGTGCAGGTAATGGGTAACCCTGAGTTATCTCATTTATTATTTTGATCACTTTCAGCAAGGTCACAACTCTAGCTCTCAGAACTTGCATTTCTTCACTCCTAGGTTGGAACTATGTCACTTCTTATGAGTATGTAGCCCACCACCCTCTTTATGTTTTTGGTGGAACAGGGCTGCTCTGACTTGTTATGAAACTGATGTGTGCAAGAGAGGTGGGGGGAGGAAGAGAGAGAGAGGATTGAGGATGTGAACACTCAGAATCAGTGTGGAGCAGTTTCCTGGTTTACAAGTGTTGTATTATGAGACAGGGCAGGCTCTGATTCTCATGAACCCTGTTTTCTCCTCCAG
Seq C2 exon
CCACGTCCACCCAGGATTCCACCTGTCTCCAGGACTCAGAATTTCCTGTTTCTTCAAAAGACCATTCCTGTCCCCAGAATTTGGACCTGTTCGTGTGCAGTGGTCTGGAGCCTCACACACCCAGTGTTGGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130803:ENST00000247956:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.101
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGGAGAGTCACGTGAGA
R:
GGAACCAACACTGGGTGTG
Band lengths:
246-816
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains