MmuINT0178967 @ mm9
Intron Retention
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19445510-19446547:+
Coord C1 exon
chr9:19445510-19445698
Coord A exon
chr9:19445699-19446407
Coord C2 exon
chr9:19446408-19446547
Length
709 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
ACTTTCTTTTCTTGCCTTAGCTA
3' ss Score
7.99
Exon sequences
Seq C1 exon
GTTGATAACCTGTCTGATTATGAGTCAAGAGGAAATGTCAAGAAACAAAATTCAGTGTTCTCCTCACTAAGTAAAAGACATAGCCTTTGAAGAATACCTTGTGGCAATTGTCCACGTAGGAATGCAGTGCTTCTTCAGGTACTCCCAGTGCCCCACAGATGGCTACCATCAGTCTATCTCCCAAGTTTG
Seq A exon
GTAAGTTCTTATGTTCTTGCCCTTAATAAATGAGCTTGTATGTTTCCTACCACTTGTAAGATAAAGGAGATACATATATGTAAACTGATGAGCCAGGATGAGTGAGCTGAACAGTGGTAGACTGTGTTATTGACTAAGGGCATGTGTGAGTTTGAGACAAAGAAGAGCATGTGTATAGCTGGCATATATAGTGAAGAAGGTAAAAGTGAAGGCTAACCCTGTGTGATCTGTTGTTTTCATAAATTTGAGAAAGGCACTTTACCTCTGAGGACTTCAGTTTCCTCACTCTGAAACAGGAAGTGCATAAAGATTGAATATCCCTTATCTGAAGTCAAAATCTGAAATTATGAGGCTAGCCATGATACCACTTGAGGAAAATTTTAAACTTTACATCCTAAAGACAGGTTAGTCAAAGTAACTATGTTATAAAAGAACCTAAAATGATCTTCAGCTAGGCGTGTTAACTGTGAAGCATAAATGAATCTTGTGTTTAAACATCAATATCATCCCTTAGAAACAAAGATTCCACAACTTAATGGATCTAAGCAAGTTGTGTGTAGGATATATCGCTGCTCATGGTTGTGTATCACCAACACTGTCACTGTTCTTGTTTGTGAATATGGAGACGATTGTGTGAGTGTTGGCACTTATTTGAGTATGCTTACTGAGTGGGTAGATGGATCTCAAGGACTTTCTTTTCTTGCCTTAG
Seq C2 exon
CTATGTCCTCTCTGGACTCTGCAGATAACCAGGAATCAGAATTTTCTCTTCCATCAAAATATGATTCTTGTCAGCAGAGTTTGGGTTTGTTTGCTTGCCATGCTCCAGAGCCTGATACACCAGCTCGTGTTTGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551-Zfp317:NM_172918:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATAACCTGTCTGATTATGAGTCA
R:
TGAGAACAAACACGAGCTGGT
Band lengths:
326-1035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: