HsaINT0186999 @ hg19
Intron Retention
Gene
ENSG00000169131 | ZNF354A
Description
zinc finger protein 354A [Source:HGNC Symbol;Acc:11628]
Coordinates
chr5:178154000-178156074:-
Coord C1 exon
chr5:178155991-178156074
Coord A exon
chr5:178154127-178155990
Coord C2 exon
chr5:178154000-178154126
Length
1864 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGAACGACTTGTCCTTACAGGTG
3' ss Score
7.8
Exon sequences
Seq C1 exon
ATCTGCCTTCTGGAGACTGCGCCGTCCTCCCGGGAGAGCCAGAAAGAGGACATGGCTGCTGGGCAGCGGGAAGCGAGGCCCCAG
Seq A exon
GTGAGCTCATTGCCCTCCCAGATCCCAGTGGATGGATTTTCCCCACTAACTGGAGTTCTTCACCCGGGACCATCTCCAGCCAGGATGGAGCCCAAGTCCTTTTCTCTTGGAGGAGCTGGTCCGCCCTCATGAGTGGTGGATTCTGTAGGGAGGACCACCCACCCTCCCCACCCGTGTCTAGTGGTTCTCTTTTTTTTTTTTTTTTTTGAATCTCGCTTTGTCGCCCAGGCAGTGGCGGGATCTCGGCTCGCTGCAACCTCTGCCTCCCAGGTTGAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCTCCCGCCATCACGCCCGGCTAAGTTTTTTTTTTTGTGCTTTTATTAGAGATGGGGTTTCACCACGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGATGTGCGCCACTGCACCCAGCCCGAATAAATCATTTTCTGTACACATTTATTTGTGTGTGTGTGTTTGTGTATGCATGTTACCATCTATGTTACCATTTTAACCTTTTTTTATTGTGGCAAAATATATATAACATAAAATATACCATTTTAACTTTTTAAGTGTATAATTCAGTGGTATTTTAGGTACTTCCGCATTGCTGTGCAGCCATCATCGCTATCCATCTTTATTGTGTAGATTATCACATTTATTTCTTAACCCTAAGGGGCAGGCATTAAAAGGCAGTTTTACAGAGTAGTTAAGAATGCAAGCTCAGTGAGACATCTGCTGGATTTGAATTACACAAGAAAAAACAAAGTCACAGAGAGGATACAAAATTTGTAGAAGTCAGCCGGCCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGTCGAGGCCGGCAGATCGCCTGAGGTTAGGAGTTTGAGACCAGCATGGTGGAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGTCTAGCACCTGTAATCCCACCTACTCAGGAGGCCGAGGCAAGAGAATCATTGGAACCCGGAAGGTGGAGGTTACAGTAAGCCAAGATCATGCCATTGCACTCCAGCCTAGGCAACAAGAGCCAAACTCTGTCTCAAAGAAAAAAAAAAATGTGTACAAGTCACACAGCTGGTCAGTGACTGTGTCTGTGTGACCTGGACAAATTTCTTATCTTGTCTGTGACTTTGTTTTCTCTTGTGTAAAGTGGCAACAATAATGGTATCGTCTTGATAGGATTGTTGTGAATGTTAAATAAAGATTATACACTGCAAATTAACATAAAGCTCTAAGATCAATACTTGGCCCATAGAAAGCCTTCAATAAATTATAGCTATTTTACTTTTCGTCATTACTATCCTTAAGCTTGAGTAAGCACATAGAGAGTACCTTCAGTTGCTTAACCTAACCTCCATCATTAAGTATTTAGATTATTCCTGGTTTTTTGCTCTTAAAAACACCATGAATATGTTTGTGTGTACTTTTGTGCACTGTTCATTATCGTACAAATAGAGTAATTGGTACTTTAAAGAGTATACTTTGAGGGTTCTAATATGTATTAGCAAATCGCCATCAGAAAGAGTTTTCTAATTAACACTCCCACTAATGGCCGTAATTCCTCTACCCATCTCTTACAGTGGCTGCACTAGGCCTGAATCTCACTGTGTGCTGCTCAGTATACATTTGTTACTGGCCAATTATTCATTAAACGAATGATCTGGAACCTTCAGAAGCTTGAATAGTATGGGAAGTGTTTCACGGGTAGCGTGTCTTTCCCACTGCCGCCCCCTCTGCTCTGTGAGGGTGGTCCTGGGTGAGCTGGAACGACTTGTCCTTACAG
Seq C2 exon
GTGTCACTGACGTTTGAGGATGTGGCTGTGCTGTTTACCCGAGATGAGTGGAGAAAGCTGGCCCCTTCTCAGAGAAACTTGTACCGGGATGTGATGCTGGAGAACTATAGGAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169131-ZNF354A:NM_005649:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCCTTCTGGAGACTGCG
R:
CCAGTGAGACCAGGTTCCTAT
Band lengths:
211-2075
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)