HsaINT0187046 @ hg38
Intron Retention
Gene
ENSG00000075407 | ZNF37A
Description
zinc finger protein 37A [Source:HGNC Symbol;Acc:HGNC:13102]
Coordinates
chr10:38115195-38125544:+
Coord C1 exon
chr10:38115195-38115290
Coord A exon
chr10:38115291-38117389
Coord C2 exon
chr10:38117390-38125544
Length
2099 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTTTTCACTCTGTATTTCAGAAT
3' ss Score
9.93
Exon sequences
Seq C1 exon
GGTATTGCATTCCTAAACCAGAAGTGATTCTCAAGTTGGAGAAAGGCGAGGAGCCATGGATATTAGAGGAAAAATTTCCAAGCCAGAGTCATCTGG
Seq A exon
GTGAGTTAGTATGTGCCAGATGGAATTTAAAGGAAGGTAGATCACAAAGGGTAAGTTTGGATAATAAGACCATTGAAATGTTCTTTAGGAATCATGTTTTAGAGGCTCCAGACCTTTGGAAGTAACATGTTGACGTGACCCAAATATGCAGTGACTCTGAATCACCCAGCATCTCCCAGTATCACTTTCATACACACATCTTGTTGTTTTTTTTAAATTGTGATATAAACTATATAGTTTAGCCAGAGATTAATAAAATTTTATATATATATGTAACACTCATGTACCCATCATTGAGATGAATATATAAAGTGATTTTTCAACACCCCCAGAAAGCTCCCTGTTGTACTCTTCCCAGTAAAGAGCATCCCTCCTTTTGTAAAATTAAATATATTTTTCTATACATGCTTTTTTGAGTTGCTCATTCATTAGCTTTTTACCATATTTACCATTTTTTACAGAATTGTTTTAAAATAGCCTGGGCCCAGTGGTTCATGCCTGTAATCCTAGGTCTTTGGGAGGCTGAGGTGGGAGGATCACTTCAGCCCAGGAATTTGAGACCAGCCTGGGCAAAATAAGAAGACCCCATCTCTATGAAAACTTAAAAAATTAGCCAGGCATGGTGGCACACACCTGTGGTCCCATGCCTGGCTAATTTTTGTGATCTCAGCTACTGGGGAGCTGAGGTGACAGTCTTGCTTTAGCCTGGGAAGAGGCTGCAGTTAACTGTGTTTGTGCCATTGCACTGCAGCCTGGGTGACAGAGCAAGATTCTGTCTCTAAAAAATAAAAAGCAATTAAAATTAAAATTACACATTCAACCAGTAACGATTTCAGCGTGAAGCCTGAAAAAATTTGTGTTTGAAAAAGCTCTCCGGATAATACTGATAAACATTATTTGTTAAGTACCATTGATTTAAATATCTATATAGGGCACTGAGAGAAAATCATAGGTAAAGTAATGGCTGCCAGGAACATAGTTGTTGAACAAAAACAGAACTGCATGAAATATTTTAAAATTCAGTGTTTAACAAAGAATATTGTTATAGCAATCCAGCTGATGTTTGTGCTTAAATGAATTATAAAAACAGTCCTTTCATGTTTTTTAGTAAATGAACCTGGGAAATTTGGGAAGGAAACTTTTTAAAAACACTGTTAGACTGCAAACTGACAATGGAAAAACAATCAGTATGAGATTATGATGGGAATGAGCAATTTATGAGGGACAAACAGCTGAACTTACCTAGAGCGAAATATATTCACTCTAGACTTGTAAAAGAATGGCTTGGTTCTAATCTGAATCTAAATGTAAAGATATGTTTACTTCAGTGATACCTTGTTTAAAAAAAAAGTGTTTGTTCTTGGGACATTGGACTCAGTATAGTATAGGACAGTTGATGAAATAAAGGGCAAATCCCACAGCTGGAATAGAACCATAAACCTGATCCTGTGGCAAGGATGGCTTGTTCACTCACTGATTTCACTCTTATTGTTGCATACTTTTATTTCTAGTGAATCAGAGCTAGAAAAACAATTGAGCCAGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGAAGGCCAGTGTGGATGAATTGTTTGAGGCTAGGAGTTCAAGACCAGCCTGGCTAACATGGCAAAATCCTGTCTCTACTAAAAACATAAAAACTAGCCAAGCATGGTTGCGTATGCCTGTAGTCCCAGCTACTTGGGAGGTTGAGGCATGGGAATCACTTGAACCCAGGAAGCGGAGATTGCAGTGAGCCGAGATCACGTCACTACACTCCAGCCTGGATGACAGAGCAAGACTCTGTCTCAAAAACACCACCACCACCACCACCAACAACAACCAAGAACAACAAAACCACACAGAATTGGAGCCTGGATTATAGGACTATGAATTAGAACTTTTAGAAATTTAATTTGTTGCTGCTGTGTTGACTTGAAAAGAGGTATAAGACTGGAAGTGTGCACATTGTCATAACATAGGTATGAGGAGATAATGGCCTAAACTGAGCCATGCCTTCAAATATAATGCTAAGTTTATTTCTCTTACATATCCTCGTCAACTAACCTTTCTTTTCACTCTGTATTTCAG
Seq C2 exon
AATTAATTAATACCAGTAGAAACTATTCAATAATGAAGTTCAATGAGTTTAACAAAGGTGGAAAATGTTTCTGTGATGAAAAGCATGAAATAATTCATTCTGAAGAGGAACCTTCTGAATATAATAAAAATGGGAACAGCTTCTGGCTGAATGAAGACCTCATTTGGCATCAGAAAATTAAAAATTGGGAACAATCTTTTGAATACAATGAATGTGGGAAAGCTTTCCCTGAGAATTCACTCTTCCTTGTACATAAGAGAGGTTACACAGGACAGAAAACCTGCAAATATACTGAACATGGGAAAACCTGTGATATGTCATTTTTCATCACTCATCAGCAAACACATCCAAGAGAAAACCACTATGGTAATGAATGTGGAGAAAATATCTTTGAGGAATCCATTCTCCTTGAACATCAGAGTGTTTACCCATTCAGCCAGAAGTTAAATCTCACTCCAATTCAGAGAACCCACTCAATTAACAATATTATTGAATATAATGAGTGTGGAACATTTTTCAGTGAAAAATTAGTCCTTCATTTACAACAGAGAACACATACAGGAGAAAAACCTTATGAATGTCATGAATGTGGAAAAACCTTCACCCAGAAGTCAGCCCACACAAGACATCAGAGAACACACACAGGGGGAAAACCCTATGAATGTCATGAATGTGGGAAGACCTTCTATAAGAATTCAGACCTCATTAAACATCAAAGAATTCATACAGGGGAGAGACCTTATGGATGTCATGAATGTGGGAAATCCTTCAGTGAAAAGTCAACCCTTACTCAACATCAAAGAACGCACACAGGGGAGAAACCATATGAATGTCATGAATGTGGGAAAACCTTCTCATTTAAGTCAGTCCTTACTGTGCATCAGAAAACACACACAGGGGAGAAGCCCTATGAATGCTATGCATGTGGGAAAGCCTTTCTCAGAAAATCAGACCTCATTAAACATCAAAGAATACACACAGGTGAAAAACCTTATGAATGTAATGAATGTGGGAAGTCATTCTCTGAGAAGTCAACCCTTACTAAACATCTAAGAACTCACACAGGTGAGAAACCTTATGAATGTATTCAGTGTGGAAAATTTTTCTGCTACTACTCCGGTTTCACAGAACATCTGAGAAGACACACAGGGGAGAAACCTTTTGGATGTAATGAATGTGGGAAAACCTTCCGTCAGAAGTCAGCCCTAATTGTTCACCAGAGAACTCATATAAGACAGAAACCCTATGGATGTAATCAATGTGGAAAATCATTCTGTGTGAAGTCAAAACTCATTGCACATCATAGAACACACACAGGGGAGAAACCCTATGAATGTAATGTTTGTGGAAAATCATTCTATGTTAAGTCAAAACTAACTGTACATCAGAGAATACACTTGGGGAGAAACCCTATAAATGTAGTAAACGAGGGAAATTACTCTGGGTGAAGTCAGAACTTTGTAGAACACAGAACATAAAGGGTGAGAGAAATCTGTTAATATAATGATAATGAGAACACCTTTGCCCTGAAGTCAGTTCTCACAGTATAGAAGAGAACTTAAAGAGGGAAAAAACAATATGAAGATAGGGAATGCAGGAAAACATTATTCTGGAATTTGGACCATACACTATGTTACAAAACTAAAAGTGGAAAAAACTTATTGGTGAATGAATATAGGAAACATTTTGCCCAATGCCACTCTTCATTAAACATCAGAGAATTCACACGGGGTGAAACCTGGGTCAGCATCCCTAGGTTGAGAAGGGATGCATTTTTCTGCTACTACTACAGTTTCACAGAATACCTGAGAAGACACACTTGGAGAAACCTTTTGGGTGTAATGAATGTGGGAAAACCTTTCATCAGAAGTCAGCTCTAATTGTTCACCACAGAACTCATATAAGACAGAAACCCTATGGGTGTAATGAATGTGGAAAATCATTCTGTGTGAAGTCAAGAGGCCAGAGAAAATGCACAAACTGTAGGAAACTATAGGAAAGCATTTACTATGAGGTTATATTTTATGGAGTATATGTAATAAGAAGTAGCTTCTCAGTGAACATCAGATAGTAGAGAAAGTATTTTTAACTGTATCCAATGTGTGGATGTTTTAAGTTAAAATCTAAATTTAATATAGAACAGAGGTGTTGAGTTGCAGGATATCTAGCAATTTAAGAAAATGTGGAAAAAATATTTTTATTGAGAAATAGCATTTTACTTTGTTAATATCTAGTTTAGTTCATTGTCAAGACTGCTATTTTCTAAGAGACTTCTAAAGACGCCACTCAAGCCAATGGCTATAAGTAGTTCAAAGGTTTATTGCTTAGCCATATGAAAAATAAGGGAAGATTTTTTAGCAAGGGGACCCACAAACAAGAGTGCTCTTGTATGTCCAGAAGAAAGAGAAAGACCATCAATCAGGGGCCATAGTACAGGAGCCCACCAGCAGGATTTTTGAATAATCCTAGGGCAGACTAAATTCAGACGACCCATCTCAGAATGGTGGATCAAAGCAGCAAGTCAATTTGCCTTGTATGCAACTTATGAGGATTAGTAGAAGAGAGTGGGTCCAGATTTCTGGTGGTTTCTGCCCTGCAGATGTCTAACACATAAGCCAGGACATTCTGCTGTGAGTGACTTATTGTACCCAACTCTATTTCTCTCCATACTGAAACATGTCTTTCATAGGTGATACAACTTTTTAAAATGTATGTGTAGATATAACTTAAATATGGAGCTTTCAAAAAGCACAAATAGGCTGGACATGGTGGCTCATGCCTGTAATCCCAGTACTTTGGGAGGCTGAGGTGGGCAAATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGATGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGTGCACATCGGTAGTCCTGGCTACTAGAGAGGTTGAGGTGGGAGGATCACTTGAACCTGGGAGGTGGGGGTTTCAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGAGTGACAGAGAGAGATTCAAAAAACAAAAAAAAAGCAAAAATATACTTTGCTATTGGGTAAGGTATAGTAGTTGGCAGCAGAATGGACCCATTGAGGATAACTATAAAATTACAGAAAATATTTAAATGCAACTTATTGCTATAGAAGCAAAGAGGACTAAAGGGCAAAATTCTAGAGAGTGGTAAATCTCAGAAAGCACAAGCATAAAATGCAGCTCTGGGGGCCCTTTCCACTTCTGGCTATAGGGAAGAACCTGAATACTGAACTTGATTCAGGCAGAGGACCATAACCTGGGGGTCAGGGGAAGGCATGGGGGGGACCAGAAACCAGAAGAACAATCAAGACTGCAATGAAAAAAATGGATACATTAGGAGCTTCAAACACATATAATTTCTCAAGAAATTTCCAGATGTCTCATGCTGCATAGGGCAGGAGCCTGAAAAGCTAATTTGAGAAGATAATAAGTAGGATTTTTGTTTTGTTTTGCATTTTGCAGTACAAAGGAGAAATGATTAGAACTTAGGAAGTGCCAGTGGGTTGGTGAACATGCCATCAGTAAAAGCCCTGGAAACAAGGTCATACTAGAGATTGGTTGTGCCTTGTCACAACTGCAAACAATACCTGAGTGGAGTATTCAAAAACTTGCTTAGAAAGAAAACTCTAGGAACAGATGGCTTCACTGAAGTTATTCCAAATATTTAAGAAATAATACCAGGCTTTTATAAACTTTTCTAGAAGAAAAAAGATGGAACTTTTCCAATTCAGTTTTTGAGGCCAGTACAACCTTGATAACAAAACCTAAAAAAAAAACAACAAAAAAACCCATAAAGCTATAGACCAAAGTCTCATAGATTTAGATGCAAAATCCTAAAATTGAAAAAAACATCTAGCCATATCCATAAACTATATCATCACCAAGAGATGTTTATTAGGGCAATCAAAAGATTTATTATTTTAAAAAAATCAGTGTGGACTTCCATTCCTCTTTCTTTTGATTCCCCCCTTTGACTTTTCATGTATCTCTCCTGCCTTCCTTCCCCAGAGTGGAGGAGTTAGACTTGCCTCGTGGGATGAGAGGAGTTGTGGCTTTGTGTCTGCTGGCACCAAGAGGGCTGAGGGTGAGGTGTGGAAGGGACAGGGGGAGGAGATGGGCAGCATTGTTGAGAGATTGGTAACACTGAGCAAATAAATATGTTGAGAATGATGACAGCAAGATTTCTCCATTAGAGAAGGTATTTATAAAAATAGGAATGAGGAGAGCTAGAAAACCTGGAGTGTGGCATTAGAATAGAACTCATATCTTTTAAATATATAGGAACAAATAAATAAATTGTTGTGTGTGCACATATGCATATATTTTGTGTTCATTCTACTGAGAGGACCTAAACACAATGACACCTCAGTAACAGTAAGCACACCAACTGCCAAGTTATTAGTTCCTAAATACTATCCACAAAAAAGGGGAACAGGGATGATTCCTAGTCAGAGATTGGGAGAAATACAAGATGAGCCTGAATCATCTCATGTACCTGACAGTAAGAAAATACTCTGGCTGGTCTCAGTGGCTCATGTCTGTAATTCTAGCATGTTAGAAGGTCAAGGTGGGTGGGTTGCTTGAGCTCAGGAGTTTGAGACCAGCCTGGGCAACATGGCACAATTGTCTCTACAAAAAATACAAAAATTAGCCAGGCATGGTGGCATGCACCTGTAGTCCGAGGTACTCAGGAGGCAGAGACGTGGGAGGATCGCTTGAGCCTGGGAGATTGAGGCTGCACTGAGCTGTGATCGTGCCACTGTACTCTAGCCTGGAAGACAGAGTGAGACCCCATCTCAGGAAAAAAGAAAAAAAAAAAGATGTCATTCAGCAGGTTAATGGATAAACTGTGGAACATCCAGAAAACTTTAACATTCTTCAAAGAAATAGAAAACACAATCCTAAAATTTATATGGGAACCACAAAAGACTTAGAATAGTCAGCTATCCTGAGCAAAAGGAATCAAACTGGAGGAATCATATTACCTGACTTCCAATTATTCAACAGAGCTACAGTAACCAAAACAGCATGATACTGGCATAACAACAGACACATAGGAACAGTATAGACAACCCAGAAACAAATTCATACATCTATGGTGACCACTTTTGACAAAGGAATGAAGAACATACACTGGGGAAAAGATAATGTCTTTAATAAATGGTGCTGGGAAAACTGGATATCCATATGCAGAAGAATGAAACTAGACCCCCATCTCTTAGCATATACAAAAATCAAAATTAATTAAAAAGTTAAATCTAAGACCTCAAACTATGAAACAGCTAAAAGAAAACATCGGGGAATCTCTCCAGGACATTGGAGTGGGCAAAGATTTCTTGTGTAATACCTGACAAACAGGCAACCAAAGCAAAAGTGGACAAATGGGATCACATCAAGTTAAAAATCTTCTGCATTGCAAAGGAAATAACAAAGTGAAGAGACAACCCATAGAATGTGAGATAATATTTGCAAACTATCCATCTGTATTAGGCCATTTTTGAAGTACTACAAAGAAATACTTGAGACTGAGTAATTTATAAAGAAGAGGTTTAATTGGCTCACGGTTTTGCAGGCTGTACAGGAAGCATGGTGCTAACATCTGATCAGCTTGTAGGGAGGCATCAGGAAGTTTCCAACCATGGTGGAAGGCAAAAGGGGAATAAGTATCTCACATGGCAGGTGCAGGGCAAAGAGAGGGGGGAAGGGAAGTGCCACACAACCAGATCTTGTGAGTACTCAGATTTTGTGAGGGGTGCTTGAGGTCATGGATACCCATTTACCCTGATGTGTTTATACACATTTCATACCTGTATTAAAATATCTCATGTACCCCATAAACATATACACCTACTTTGTACCCACAAAAATTTAAAAATAAAGTTAATTTCAATGTTTAAAGACTTGTTATTAAAATAATAGCAGTTTCTATAAATTTAATATTTCAATAAAACTCCCAGTATTTATTGTTAACACTGGAAAAAGTTTTCCAAAACGTATATGGCAGAAATATGGGCCTTGATGTGAGGACAGCATCAATTAATGAGGGATCCTCTCCCTTGATCAAAACACCTTCCACCAAGACCCACCTTTAACGCTGAGCATTACCTCTCAAAGTGAGATTTGGGCAGGGACTAATATCCAAACTGTATCAACATCTGACAAGGTGTTCACAACCAGAATATATAAGGAGCTATAACAATTCTATAGAAAAAAAAATCTGATTTAAAACTGGGCAAAAATCTGAATAGACGTTTCTCAAAAGAAGACATACAAATGGCAAACAGGCATATGAAAAGGTACTCAACATCATTGATCCATTAGAGAAATGCAAATCAAAACTACAATAAGATATCATCTCACCCCAGTTAAAATGTCTTCTCTCCAAAAGACAGATAATAACAAATGCTGAAGAGGATGTGGAGAAAAGGGAAACCTCGTGCACTGTGGAAATGTTATTAGTACAACCACTATGGACAACAATTTGGAGGTACCTCAAAAACTAAAAATAGAGCTATCATACAATCCCACAATTCCACTGGTAGTTATATACCCCAAAGACAGGAAATCAGTATATTGAAGATATATCTGCACCGTGTTTACTGTAGCACTACTCACAATAGCCAAGATTTGGAAGCAACCTAAGTGTCTAACAGCAGATGAATGGATAAATAAAATATGGTACATAAACACAATGGAGTACTATTCAGCCATAAAAAAGAATGAGATCCTGTCATTTGCAACATTGTAGATGGAACTAGAGATCATTAAGTGAAATAAGCCAGGCACAGCAAGACAGACATCATGTTCTGACGTATTTGTTGGAGCTAAAGATGAAAACAACTGAACTTATAGAGGGTAGAAGGATGTTTACCAGAGGCGGGAAAGGCAGTGAGGGCATGGTGAGGGGGAAGTGGGGAATGTTAACGGGCACAAAATGTAGAATGACTAAGACCTAGTATTTGATAGCACAAGGTTACTACAGTCAATAATAATTGTGCATTTTAAAGGTATAATTGAATTGTAACACAAAGGATAAATGCTTGAGGTTATGGATACCCCATTTACCCTGATGTGATTATTAGACATTGCATGCCTATATCAAAATATATCATGTACCCCATAGATATATACACCTAGTATGTACCCACAAAAATTAAAAATAAAGTAAAATTTCAATGATTAGGAAGACCATTGTTAATATCAGTTTCCTTTAAATGTTTCTATAAATTTAATACAATTTCAATAAAGCTCCCAATATTTATTCTTAGTACTGGAAAAAGTTTTCCAAAATGTGTATGGCAGAAATAGGGCCAAAATAGGCAAGAAAACTATTTTCGAGATGTCAGTTTTCCTCAAATTGTTCTATTAATTAAACGCCACCTGAATTAAAATTTGACAAGTGGATTATAAATTTATGTGGACATTCAAAACAATTATGGATACATGAGTCCAGAATCACAGCCATAAACCATGAGGTGCTTGGGAGATTTTCAGAAAATATGCCAATGAAATCCAAGGGGAAAGACATGTCTTCAAAAAGTGGTGTTACCTTTGACTCCCCAAAGCATATATAAAGCCTCTACTCATCATAGATCTAAATATAAGAGCTCAAACTTAAAACTTGTAGAAGAAAACATGAGAAAATTTTTGTAGGTTTGAGTTAGATGATGATTTCTATATAGGACAATAAAAATATGGAACATACAAAAATAAATTTAATGCACTTAATTATAATACAAATGATTTACTCACTTTAAACTTTGATAAATTAGATTTTGTTAAATTCAAAAGCTTGTGTTCTTCAAAGCACACAGTTAAGGAAATGGAAAGGCGAGTAATGGACTAAAAAAAATACCTGTAAAACAGCTTTGGTTAAGAATAGAAGAAAAATCCTAATAAGAAAATTGGTGAAAGAATGGTGTGGAAAGTTCACTACAGAAAAAATATGAATGGCAAATAATCCTGATTTGGGGGAGAGTGTTCAATACCAATGCTAATTTTTTAAATGTCCTGTGTTTAATTTTTTGGAGTTTGTGATTTGCAACATGCCCCTACTGCATGGAGGGAGAGGAGATGGTAAAATGAACAGAAGTAATAATTGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075407:ENST00000361085:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains