HsaINT0187046 @ hg19
Intron Retention
Gene
ENSG00000075407 | ZNF37A
Description
zinc finger protein 37A [Source:HGNC Symbol;Acc:13102]
Coordinates
chr10:38404123-38412278:+
Coord C1 exon
chr10:38404123-38404218
Coord A exon
chr10:38404219-38406317
Coord C2 exon
chr10:38406318-38412278
Length
2099 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTTTTCACTCTGTATTTCAGAAT
3' ss Score
9.93
Exon sequences
Seq C1 exon
GGTATTGCATTCCTAAACCAGAAGTGATTCTCAAGTTGGAGAAAGGCGAGGAGCCATGGATATTAGAGGAAAAATTTCCAAGCCAGAGTCATCTGG
Seq A exon
GTGAGTTAGTATGTGCCAGATGGAATTTAAAGGAAGGTAGATCACAAAGGGTAAGTTTGGATAATAAGACCATTGAAATGTTCTTTAGGAATCATGTTTTAGAGGCTCCAGACCTTTGGAAGTAACATGTTGACGTGACCCAAATATGCAGTGACTCTGAATCACCCAGCATCTCCCAGTATCACTTTCATACACACATCTTGTTGTTTTTTTTAAATTGTGATATAAACTATATAGTTTAGCCAGAGATTAATAAAATTTTATATATATATGTAACACTCATGTACCCATCATTGAGATGAATATATAAAGTGATTTTTCAACACCCCCAGAAAGCTCCCTGTTGTACTCTTCCCAGTAAAGAGCATCCCTCCTTTTGTAAAATTAAATATATTTTTCTATACATGCTTTTTTGAGTTGCTCATTCATTAGCTTTTTACCATATTTACCATTTTTTACAGAATTGTTTTAAAATAGCCTGGGCCCAGTGGTTCATGCCTGTAATCCTAGGTCTTTGGGAGGCTGAGGTGGGAGGATCACTTCAGCCCAGGAATTTGAGACCAGCCTGGGCAAAATAAGAAGACCCCATCTCTATGAAAACTTAAAAAATTAGCCAGGCATGGTGGCACACACCTGTGGTCCCATGCCTGGCTAATTTTTGTGATCTCAGCTACTGGGGAGCTGAGGTGACAGTCTTGCTTTAGCCTGGGAAGAGGCTGCAGTTAACTGTGTTTGTGCCATTGCACTGCAGCCTGGGTGACAGAGCAAGATTCTGTCTCTAAAAAATAAAAAGCAATTAAAATTAAAATTACACATTCAACCAGTAACGATTTCAGCGTGAAGCCTGAAAAAATTTGTGTTTGAAAAAGCTCTCCGGATAATACTGATAAACATTATTTGTTAAGTACCATTGATTTAAATATCTATATAGGGCACTGAGAGAAAATCATAGGTAAAGTAATGGCTGCCAGGAACATAGTTGTTGAACAAAAACAGAACTGCATGAAATATTTTAAAATTCAGTGTTTAACAAAGAATATTGTTATAGCAATCCAGCTGATGTTTGTGCTTAAATGAATTATAAAAACAGTCCTTTCATGTTTTTTAGTAAATGAACCTGGGAAATTTGGGAAGGAAACTTTTTAAAAACACTGTTAGACTGCAAACTGACAATGGAAAAACAATCAGTATGAGATTATGATGGGAATGAGCAATTTATGAGGGACAAACAGCTGAACTTACCTAGAGCGAAATATATTCACTCTAGACTTGTAAAAGAATGGCTTGGTTCTAATCTGAATCTAAATGTAAAGATATGTTTACTTCAGTGATACCTTGTTTAAAAAAAAAGTGTTTGTTCTTGGGACATTGGACTCAGTATAGTATAGGACAGTTGATGAAATAAAGGGCAAATCCCACAGCTGGAATAGAACCATAAACCTGATCCTGTGGCAAGGATGGCTTGTTCACTCACTGATTTCACTCTTATTGTTGCATACTTTTATTTCTAGTGAATCAGAGCTAGAAAAACAATTGAGCCAGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGAAGGCCAGTGTGGATGAATTGTTTGAGGCTAGGAGTTCAAGACCAGCCTGGCTAACATGGCAAAATCCTGTCTCTACTAAAAACATAAAAACTAGCCAAGCATGGTTGCGTATGCCTGTAGTCCCAGCTACTTGGGAGGTTGAGGCATGGGAATCACTTGAACCCAGGAAGCGGAGATTGCAGTGAGCCGAGATCACGTCACTACACTCCAGCCTGGATGACAGAGCAAGACTCTGTCTCAAAAACACCACCACCACCACCACCAACAACAACCAAGAACAACAAAACCACACAGAATTGGAGCCTGGATTATAGGACTATGAATTAGAACTTTTAGAAATTTAATTTGTTGCTGCTGTGTTGACTTGAAAAGAGGTATAAGACTGGAAGTGTGCACATTGTCATAACATAGGTATGAGGAGATAATGGCCTAAACTGAGCCATGCCTTCAAATATAATGCTAAGTTTATTTCTCTTACATATCCTCGTCAACTAACCTTTCTTTTCACTCTGTATTTCAG
Seq C2 exon
AATTAATTAATACCAGTAGAAACTATTCAATAATGAAGTTCAATGAGTTTAACAAAGGTGGAAAATGTTTCTGTGATGAAAAGCATGAAATAATTCATTCTGAAGAGGAACCTTCTGAATATAATAAAAATGGGAACAGCTTCTGGCTGAATGAAGACCTCATTTGGCATCAGAAAATTAAAAATTGGGAACAATCTTTTGAATACAATGAATGTGGGAAAGCTTTCCCTGAGAATTCACTCTTCCTTGTACATAAGAGAGGTTACACAGGACAGAAAACCTGCAAATATACTGAACATGGGAAAACCTGTGATATGTCATTTTTCATCACTCATCAGCAAACACATCCAAGAGAAAACCACTATGGTAATGAATGTGGAGAAAATATCTTTGAGGAATCCATTCTCCTTGAACATCAGAGTGTTTACCCATTCAGCCAGAAGTTAAATCTCACTCCAATTCAGAGAACCCACTCAATTAACAATATTATTGAATATAATGAGTGTGGAACATTTTTCAGTGAAAAATTAGTCCTTCATTTACAACAGAGAACACATACAGGAGAAAAACCTTATGAATGTCATGAATGTGGAAAAACCTTCACCCAGAAGTCAGCCCACACAAGACATCAGAGAACACACACAGGGGGAAAACCCTATGAATGTCATGAATGTGGGAAGACCTTCTATAAGAATTCAGACCTCATTAAACATCAAAGAATTCATACAGGGGAGAGACCTTATGGATGTCATGAATGTGGGAAATCCTTCAGTGAAAAGTCAACCCTTACTCAACATCAAAGAACGCACACAGGGGAGAAACCATATGAATGTCATGAATGTGGGAAAACCTTCTCATTTAAGTCAGTCCTTACTGTGCATCAGAAAACACACACAGGGGAGAAGCCCTATGAATGCTATGCATGTGGGAAAGCCTTTCTCAGAAAATCAGACCTCATTAAACATCAAAGAATACACACAGGTGAAAAACCTTATGAATGTAATGAATGTGGGAAGTCATTCTCTGAGAAGTCAACCCTTACTAAACATCTAAGAACTCACACAGGTGAGAAACCTTATGAATGTATTCAGTGTGGAAAATTTTTCTGCTACTACTCCGGTTTCACAGAACATCTGAGAAGACACACAGGGGAGAAACCTTTTGGATGTAATGAATGTGGGAAAACCTTCCGTCAGAAGTCAGCCCTAATTGTTCACCAGAGAACTCATATAAGACAGAAACCCTATGGATGTAATCAATGTGGAAAATCATTCTGTGTGAAGTCAAAACTCATTGCACATCATAGAACACACACAGGGGAGAAACCCTATGAATGTAATGTTTGTGGAAAATCATTCTATGTTAAGTCAAAACTAACTGTACATCAGAGAATACACTTGGGGAGAAACCCTATAAATGTAGTAAACGAGGGAAATTACTCTGGGTGAAGTCAGAACTTTGTAGAACACAGAACATAAAGGGTGAGAGAAATCTGTTAATATAATGATAATGAGAACACCTTTGCCCTGAAGTCAGTTCTCACAGTATAGAAGAGAACTTAAAGAGGGAAAAAACAATATGAAGATAGGGAATGCAGGAAAACATTATTCTGGAATTTGGACCATACACTATGTTACAAAACTAAAAGTGGAAAAAACTTATTGGTGAATGAATATAGGAAACATTTTGCCCAATGCCACTCTTCATTAAACATCAGAGAATTCACACGGGGTGAAACCTGGGTCAGCATCCCTAGGTTGAGAAGGGATGCATTTTTCTGCTACTACTACAGTTTCACAGAATACCTGAGAAGACACACTTGGAGAAACCTTTTGGGTGTAATGAATGTGGGAAAACCTTTCATCAGAAGTCAGCTCTAATTGTTCACCACAGAACTCATATAAGACAGAAACCCTATGGGTGTAATGAATGTGGAAAATCATTCTGTGTGAAGTCAAGAGGCCAGAGAAAATGCACAAACTGTAGGAAACTATAGGAAAGCATTTACTATGAGGTTATATTTTATGGAGTATATGTAATAAGAAGTAGCTTCTCAGTGAACATCAGATAGTAGAGAAAGTATTTTTAACTGTATCCAATGTGTGGATGTTTTAAGTTAAAATCTAAATTTAATATAGAACAGAGGTGTTGAGTTGCAGGATATCTAGCAATTTAAGAAAATGTGGAAAAAATATTTTTATTGAGAAATAGCATTTTACTTTGTTAATATCTAGTTTAGTTCATTGTCAAGACTGCTATTTTCTAAGAGACTTCTAAAGACGCCACTCAAGCCAATGGCTATAAGTAGTTCAAAGGTTTATTGCTTAGCCATATGAAAAATAAGGGAAGATTTTTTAGCAAGGGGACCCACAAACAAGAGTGCTCTTGTATGTCCAGAAGAAAGAGAAAGACCATCAATCAGGGGCCATAGTACAGGAGCCCACCAGCAGGATTTTTGAATAATCCTAGGGCAGACTAAATTCAGACGACCCATCTCAGAATGGTGGATCAAAGCAGCAAGTCAATTTGCCTTGTATGCAACTTATGAGGATTAGTAGAAGAGAGTGGGTCCAGATTTCTGGTGGTTTCTGCCCTGCAGATGTCTAACACATAAGCCAGGACATTCTGCTGTGAGTGACTTATTGTACCCAACTCTATTTCTCTCCATACTGAAACATGTCTTTCATAGGTGATACAACTTTTTAAAATGTATGTGTAGATATAACTTAAATATGGAGCTTTCAAAAAGCACAAATAGGCTGGACATGGTGGCTCATGCCTGTAATCCCAGTACTTTGGGAGGCTGAGGTGGGCAAATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGATGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGTGCACATCGGTAGTCCTGGCTACTAGAGAGGTTGAGGTGGGAGGATCACTTGAACCTGGGAGGTGGGGGTTTCAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGAGTGACAGAGAGAGATTCAAAAAACAAAAAAAAAGCAAAAATATACTTTGCTATTGGGTAAGGTATAGTAGTTGGCAGCAGAATGGACCCATTGAGGATAACTATAAAATTACAGAAAATATTTAAATGCAACTTATTGCTATAGAAGCAAAGAGGACTAAAGGGCAAAATTCTAGAGAGTGGTAAATCTCAGAAAGCACAAGCATAAAATGCAGCTCTGGGGGCCCTTTCCACTTCTGGCTATAGGGAAGAACCTGAATACTGAACTTGATTCAGGCAGAGGACCATAACCTGGGGGTCAGGGGAAGGCATGGGGGGGACCAGAAACCAGAAGAACAATCAAGACTGCAATGAAAAAAATGGATACATTAGGAGCTTCAAACACATATAATTTCTCAAGAAATTTCCAGATGTCTCATGCTGCATAGGGCAGGAGCCTGAAAAGCTAATTTGAGAAGATAATAAGTAGGATTTTTGTTTTGTTTTGCATTTTGCAGTACAAAGGAGAAATGATTAGAACTTAGGAAGTGCCAGTGGGTTGGTGAACATGCCATCAGTAAAAGCCCTGGAAACAAGGTCATACTAGAGATTGGTTGTGCCTTGTCACAACTGCAAACAATACCTGAGTGGAGTATTCAAAAACTTGCTTAGAAAGAAAACTCTAGGAACAGATGGCTTCACTGAAGTTATTCCAAATATTTAAGAAATAATACCAGGCTTTTATAAACTTTTCTAGAAGAAAAAAGATGGAACTTTTCCAATTCAGTTTTTGAGGCCAGTACAACCTTGATAACAAAACCTAAAAAAAAAACAACAAAAAAACCCATAAAGCTATAGACCAAAGTCTCATAGATTTAGATGCAAAATCCTAAAATTGAAAAAAACATCTAGCCATATCCATAAACTATATCATCACCAAGAGATGTTTATTAGGGCAATCAAAAGATTTATTATTTTAAAAAAATCAGTGTGGACTTCCATTCCTCTTTCTTTTGATTCCCCCCTTTGACTTTTCATGTATCTCTCCTGCCTTCCTTCCCCAGAGTGGAGGAGTTAGACTTGCCTCGTGGGATGAGAGGAGTTGTGGCTTTGTGTCTGCTGGCACCAAGAGGGCTGAGGGTGAGGTGTGGAAGGGACAGGGGGAGGAGATGGGCAGCATTGTTGAGAGATTGGTAACACTGAGCAAATAAATATGTTGAGAATGATGACAGCAAGATTTCTCCATTAGAGAAGGTATTTATAAAAATAGGAATGAGGAGAGCTAGAAAACCTGGAGTGTGGCATTAGAATAGAACTCATATCTTTTAAATATATAGGAACAAATAAATAAATTGTTGTGTGTGCACATATGCATATATTTTGTGTTCATTCTACTGAGAGGACCTAAACACAATGACACCTCAGTAACAGTAAGCACACCAACTGCCAAGTTATTAGTTCCTAAATACTATCCACAAAAAAGGGGAACAGGGATGATTCCTAGTCAGAGATTGGGAGAAATACAAGATGAGCCTGAATCATCTCATGTACCTGACAGTAAGAAAATACTCTGGCTGGTCTCAGTGGCTCATGTCTGTAATTCTAGCATGTTAGAAGGTCAAGGTGGGTGGGTTGCTTGAGCTCAGGAGTTTGAGACCAGCCTGGGCAACATGGCACAATTGTCTCTACAAAAAATACAAAAATTAGCCAGGCATGGTGGCATGCACCTGTAGTCCGAGGTACTCAGGAGGCAGAGACGTGGGAGGATCGCTTGAGCCTGGGAGATTGAGGCTGCACTGAGCTGTGATCGTGCCACTGTACTCTAGCCTGGAAGACAGAGTGAGACCCCATCTCAGGAAAAAAGAAAAAAAAAAAGATGTCATTCAGCAGGTTAATGGATAAACTGTGGAACATCCAGAAAACTTTAACATTCTTCAAAGAAATAGAAAACACAATCCTAAAATTTATATGGGAACCACAAAAGACTTAGAATAGTCAGCTATCCTGAGCAAAAGGAATCAAACTGGAGGAATCATATTACCTGACTTCCAATTATTCAACAGAGCTACAGTAACCAAAACAGCATGATACTGGCATAACAACAGACACATAGGAACAGTATAGACAACCCAGAAACAAATTCATACATCTATGGTGACCACTTTTGACAAAGGAATGAAGAACATACACTGGGGAAAAGATAATGTCTTTAATAAATGGTGCTGGGAAAACTGGATATCCATATGCAGAAGAATGAAACTAGACCCCCATCTCTTAGCATATACAAAAATCAAAATTAATTAAAAAGTTAAATCTAAGACCTCAAACTATGAAACAGCTAAAAGAAAACATCGGGGAATCTCTCCAGGACATTGGAGTGGGCAAAGATTTCTTGTGTAATACCTGACAAACAGGCAACCAAAGCAAAAGTGGACAAATGGGATCACATCAAGTTAAAAATCTTCTGCATTGCAAAGGAAATAACAAAGTGAAGAGACAACCCATAGAATGTGAGATAATATTTGCAAACTATCCATCTGTATTAGGCCATTTTTGAAGTACTACAAAGAAATACTTGAGACTGAGTAATTTATAAAGAAGAGGTTTAATTGGCTCACGGTTTTGCAGGCTGTACAGGAAGCATGGTGCTAACATCTGATCAGCTTGTAGGGAGGCATCAGGAAGTTTCCAACCATGGTGGAAGGCAAAAGGGGAATAAGTATCTCACATGGCAGGTGCAGGGCAAAGAGAGGGGGGAAGGGAAGTGCCACACAACCAGATCTTGTGAGTACTCAGATTTTGTGAGGGGTGCTTGAGGTCATGGATACCCATTTACCCTGATGTGTTTATACACATTTCATACCTGTATTAAAATATCTCATGTACCCCATAAACATATACACCTACTTTGTACCCACAAAAATTTAAAAATAAAGTTAATTTCAATGTTTAAAGACTTGTTATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075407-ZNF37A:NM_001007094:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)