HsaALTD0007437-1/2 @ hg19

Alternative 5'ss

Gene

ENSG00000075407 | ZNF37A

Description

zinc finger protein 37A [Source:HGNC Symbol;Acc:13102]

Coordinates

chr10:38404123-38412276:+

Coord C1 exon

chr10:38404123-38404218

Coord A exon

NA

Coord C2 exon

chr10:38406318-38412276

Length

0 bp

Sequences

Splice sites

5' ss Seq

TGGGTGAGT

5' ss Score

8.73

3' ss Seq

CTTTTCACTCTGTATTTCAGAAT

3' ss Score

9.93

Exon sequences

Seq C1 exon

GGTATTGCATTCCTAAACCAGAAGTGATTCTCAAGTTGGAGAAAGGCGAGGAGCCATGGATATTAGAGGAAAAATTTCCAAGCCAGAGTCATCTGG

Seq A exon

NA

Seq C2 exon

AATTAATTAATACCAGTAGAAACTATTCAATAATGAAGTTCAATGAGTTTAACAAAGGTGGAAAATGTTTCTGTGATGAAAAGCATGAAATAATTCATTCTGAAGAGGAACCTTCTGAATATAATAAAAATGGGAACAGCTTCTGGCTGAATGAAGACCTCATTTGGCATCAGAAAATTAAAAATTGGGAACAATCTTTTGAATACAATGAATGTGGGAAAGCTTTCCCTGAGAATTCACTCTTCCTTGTACATAAGAGAGGTTACACAGGACAGAAAACCTGCAAATATACTGAACATGGGAAAACCTGTGATATGTCATTTTTCATCACTCATCAGCAAACACATCCAAGAGAAAACCACTATGGTAATGAATGTGGAGAAAATATCTTTGAGGAATCCATTCTCCTTGAACATCAGAGTGTTTACCCATTCAGCCAGAAGTTAAATCTCACTCCAATTCAGAGAACCCACTCAATTAACAATATTATTGAATATAAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000075407-8-9,9-9-1/2

Average complexity

Alt5

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.056

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4)

Main Inclusion Isoform:

ENSP00000329141