HsaALTD0007437-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000075407 | ZNF37A
Description
zinc finger protein 37A [Source:HGNC Symbol;Acc:13102]
Coordinates
chr10:38404123-38412276:+
Coord C1 exon
chr10:38404123-38404218
Coord A exon
chr10:38404219-38404250
Coord C2 exon
chr10:38406318-38412276
Length
32 bp
Sequences
Splice sites
5' ss Seq
AAGGAAGGT
5' ss Score
2.1
3' ss Seq
CTTTTCACTCTGTATTTCAGAAT
3' ss Score
9.93
Exon sequences
Seq C1 exon
GGTATTGCATTCCTAAACCAGAAGTGATTCTCAAGTTGGAGAAAGGCGAGGAGCCATGGATATTAGAGGAAAAATTTCCAAGCCAGAGTCATCTGG
Seq A exon
GTGAGTTAGTATGTGCCAGATGGAATTTAAAG
Seq C2 exon
AATTAATTAATACCAGTAGAAACTATTCAATAATGAAGTTCAATGAGTTTAACAAAGGTGGAAAATGTTTCTGTGATGAAAAGCATGAAATAATTCATTCTGAAGAGGAACCTTCTGAATATAATAAAAATGGGAACAGCTTCTGGCTGAATGAAGACCTCATTTGGCATCAGAAAATTAAAAATTGGGAACAATCTTTTGAATACAATGAATGTGGGAAAGCTTTCCCTGAGAATTCACTCTTCCTTGTACATAAGAGAGGTTACACAGGACAGAAAACCTGCAAATATACTGAACATGGGAAAACCTGTGATATGTCATTTTTCATCACTCATCAGCAAACACATCCAAGAGAAAACCACTATGGTAATGAATGTGGAGAAAATATCTTTGAGGAATCCATTCTCCTTGAACATCAGAGTGTTTACCCATTCAGCCAGAAGTTAAATCTCACTCCAATTCAGAGAACCCACTCAATTAACAATATTATTGAATATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075407-8-9,9-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTGGAGAAAGGCGAGGA
R:
TCCACCTTTGTTAAACTCATTGAACT
Band lengths:
127-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)