RnoINT0168732 @ rn6
Intron Retention
Gene
ENSRNOG00000006726 | Zfp9
Description
zinc finger protein 9 [Source:NCBI gene;Acc:100158232]
Coordinates
chr4:150519513-150520363:-
Coord C1 exon
chr4:150520267-150520363
Coord A exon
chr4:150519577-150520266
Coord C2 exon
chr4:150519513-150519576
Length
690 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
AAATCTTGATTCTTTTGTAGATA
3' ss Score
6.38
Exon sequences
Seq C1 exon
GGCTATCGTGTGGTCAAGCCAAGTATGATCTCCAAGTTGAAGAAAGGAAAAGAGCCATGGCCACTAGGAGCAGAATTTTTACGTAGGAGCTGTGGTG
Seq A exon
GTGAGTCAGAAAAAAATCGTATTGCGCCACGTGACCCTTTGAAATATCGGTCAGGAAAGCCTTTTGAAATAGTTAAGGGATCTTCCTAAATCCTCTATAGTTCTAGAAATGGTTGAAGATACTGTTGGCATATATTTAAATCTAAAAGCACACCAATTTTCACCTCTCCATGTAAATCTGTCTTTTATTAGACATTTTTACTTTTTTAATAATGTATTTTTATTTCACATGCCTTGGCGTTTGGTCTGAGTGTATGTCTGTATGAGATCCCTGGAACTGGAGTTACAGACAGTTTTGAGCTGCCATGTAGGTACTGTCTCTGTGTATGTGTGGTGTGGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGAAGGGTGGAGAATGAATACTTCAGCTCATCTAGATTTCTCTACTTTTATGCAATTAAAGACCAGAACCCAGGGAGCAGTGCTTCTCACTTTTAGATTACTTTCCTACATCCATTAATATAATCAAGACATGTCCACAGGTCAGCAGATCTAGCTGATCCCTCTTTGAGACTCTCTTTATAATAATGAAAACTGTCACAATGGTATAGAGGACAATTTCATTTGAGAGTGATTTCGTCTTGACACCCTTTCTTGAAGCCTAAGAATCAACCTTTAGCCATGATGGTGTGTTAAAATCTTGATTCTTTTGTAG
Seq C2 exon
ATAAGCGGCGGACGGTTCATGACCCCAAAGCCAGACATCAGGAGCAACAGGCTGGGACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006726:ENSRNOT00000065579:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=NA C2=0.890
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]