BtaINT0165111 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038178 | ZNF25
Description
zinc finger protein 25 [Source:HGNC Symbol;Acc:HGNC:13043]
Coordinates
chr28:13139189-13141080:+
Coord C1 exon
chr28:13139189-13139284
Coord A exon
chr28:13139285-13141016
Coord C2 exon
chr28:13141017-13141080
Length
1732 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AATTTTGGATTCCTTTGTAGAAG
3' ss Score
5.8
Exon sequences
Seq C1 exon
GCTATTGTGCAAATAGGCCAAATGCAATCTTCAAGTTGAAGCAAGGAAAAGAACCATGGATATTAGAAGTACAATTTCCACGTCAGAACAACCCTG
Seq A exon
GTAAGTTAGAAATTATAACTTGTATAAGGGGGTTGGAATTGGTGCCTTTGATTTTTTGAAATTTTTTTTCAAGAATCTCTTTTTTAAATGTCCTTAAACTTTTGGAAATGATTGAGGATACTTGATCTGCATATGTAAGCAAAATAAATCACACCTCCAGTTTTTGCCTCCTCATCTAAATTCCCTCTTTTGTGTGGGGCAGATGGAGATGGTTGATTTTTTGTTTAAAAAAACATTCCCTCTTTTACTTGACATTTTTAAAGTAGATTTATTTCTTTTTCACTTAAACTCTCATTTTGTCTTTTTGCTAGAATTTCCAGTTACTCCTTGGCATTAAAGTATGCAGCTATAATCTTAAAGTGTTTATAAAATCTATCTTATAAAATTTTCAAGTGCCATTTTTCCTCCTTTCATTAACAATAAAATGCCTTAGATTTTCAGCACCCATTTTAATTTACTATTCTCTCTTTAATCTCTGAAATTGGATTATAAATCATTATGCCTTTCATTAGCTATATTATTTCAGAGCTGATACAAAATACACCTAATTTTCTGTCAAGAACTAGTCTGGCCCTTTATTGCCTGCTGCATCTTATTTTTCCTTGTGGCCCCAAAACATGTGCTAATCTTCATTTTATCTGCTCTCAAGTGCTTTTTATACTTAAGGTCTTATTTCATGAGTATCCCAATTTAACCTTGCACACATCCCTATCAAATAATTTTGTGTTTTCCTTACAAGTGCCATGAAATTCTAACCCAAAATCTCTACTCATAAGCTCACTTTTTTTCAAGCATTTAAAAATGAATAAACATGAATGTCTGTCAAGATTCTAGAATGACGTTGAATAATTACCCTTTAAAGATCATGTAGAAAATTGAAGCAGAGATGTGGGAGTTAAGATATAAAAGCAGAATAAGACTAGTGTTGAGTCACAGATGCAGTATGTGGCGATACTGAAAATCTCTGGTGCTACAACTGAGAATTCATTCTGTGGGATGGCTTGTACTCTGCTTTTTTTTTAATCTTTTTTTAAAAACCTTTTGGATGTATGTGTTTCTGGGTCTTCTGAACCAGCCAACTAGAAAAAGAATTTTCCTCTAAACATGAGGAAATGGATATTCTGAGAAGGTCACTTTAGTGTTGACATCTAGATTGTTGGGTATGGGCAAAGAGGAATAAAGTGGAAGTTTATAGTCTAATTACTAGAAATCCTAACACTATAAACTAGGTTTGAGAGGGTAAAGACCTATACTTAGCTCCTTCATCGAATATAATCTTTCCTTTGATATTTCCAGTGAATACAGTTGTCTACTAATTTTCCTTATCACCCTACTTACTATTCATTCTCCTTAATGGGCTCACATCATGCTCTGTGAGTCTCACATTCTTGTTCAGCAGCACTTTGAATACCTTTTGTTTTCTGCTCCCTATTCTTTGTGTTTTTTGGTGGGTTTTTTTTTTTTTTTTTTTTTGTCTATACTTTCTCCTCCAAGGTTTTAAGGTCATATTTGTAGTGTCAAAGTTACCTGAATTTATAACTAGATCTCTCTCTCTTCTCTGTAGCAGGTTTTAGTGTTATTTATATGTTTTTTCTAAGCCACTGAGATAGAGGAAGTTTGCACTTAAGAACTCCTTCATTTGAGAATAACAGCCTGAAACCTAAGAATCCACCCTATGAGCATAATAATGTGTTAAGATGTATAAAGTATTAAATTTTGGATTCCTTTGTAG
Seq C2 exon
AAGACCTATGCAATACTCATGACCAAGGAGCAAGATGCCCAGAAAGCCAAGCTGAAAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038178:ENSBTAT00000052912:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.955
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]