HsaINT0186585 @ hg19
Intron Retention
Gene
ENSG00000175395 | ZNF25
Description
zinc finger protein 25 [Source:HGNC Symbol;Acc:13043]
Coordinates
chr10:38242623-38246043:-
Coord C1 exon
chr10:38245948-38246043
Coord A exon
chr10:38242687-38245947
Coord C2 exon
chr10:38242623-38242686
Length
3261 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CATTTTTGGTTCCCTTGTAGAAG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTTACCATGTGAATAAGCCAAATGCAGTCTTCAAGTTGAAGCAAGGAAAAGAGCCATGGATATTAGAAGTAGAATTTCCACATCGGGGCTTCCCTG
Seq A exon
GTGAGTTAGAAGAAATTATATCCCATGTTACTGGTGAGTAGTTGGTGCCTCTTGCCTTCTGAAGTACTTTTCGGCAATCTCTCACTTTTTTTTTTTTTTTTTTTGAAACAGAGTTTCACTCTTGTTGTCCAGGCTGGAGTCCAATGTTGCCATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTCCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTACCACCAGCCTGGCTAATTTGGTACTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCCAACCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGTCACCGTGCCCGGCCTCAGCAGTCTCTTTATAAATGCCCTGTAGTTTTGGAAGCGATTAAGGACACTTTATTTGCACGTGTAAAAAAACCTAATTCACACCTCCAATTTTTGTTCTCTCCACTTAAATTCTCTTCTTTGCTAGACATGTTTTAAATAGATTTACTTCTCTTTCCTGTATACAAACTCTTATCTCTCCTTACCCTTGTAAGACTTTGTCTTTTTGTCTAGAATCGCCAGTTACTCCCTGCCATTAGAGTATGCAACTATAAAGTGTTTGTAAATCTGACTTATAACGTTTTTAAATGGCATCGCCTTCCTTTTATTAACAATAAAATACCTCAGTTATTTTGGCACCACTTTTAACTTCCCATTTTTTCTTTAAACTCTGAGCTCAGATTAAAAATCGGTATGCTGCTCATCAATTCTTTCATTTTGGAGTTGCTACTTCCTGCTATACAGTGTTTATCCTTCCCACAAAGCACTGCTTATCCTCCCTAAACTTATTTGGATAACACTAAGACAATCTCATCCTGCCTTCTTAAATGTTTGTCACGTATTTTCTAACTTGTGCACAGATGTGTTGCCAGTATCAGGAACAATGCCTAGTACATATTAGTTGCTCGCTAGATATTTGTTGAAAGAATGAATATTAATTAACAAGAGACTGGCTGGGAGTGGCGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGTGGGTGGATCACTTGAGGCCCGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCTTGGTGGTGCACACCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCTTAGGCATGAGAATTGCTTAAACCCAGGAAGCAGTGGTTACAGTGAGCCAAGATCGCCCCACTGCACTCCAGCCTGGACAACAGTGAGACTCATGTTCATGAAAAAAAGAAATAATAAATATATAAAATAATTAACAACAGACACTTTCTACTTTCTGCTCTGTTCCTTTTATTAACTCCTGTAGAAGCTCATCCATTCTTAAAGCCAATGCATTGGTTTTTATGATAAGGATTCCTAAAATTGACCTCTCCAGCATCTTTGCCCTATTTATATTCTGATCCCATATTTTTACCTTCTTGTAAGATAGTTCTGCTTATTCTACTTCCTTCCTTGTTAGGGTCAAAACAAAAATTGTTGATTTAAATTCCCACAGTAGTTGTGTAATGCAGCAGATGTACATTGCCAGAAGCCTGCATGGTATACTTAATACTGACTCAGTATTAAGTCCTTTAGACAAAATAAAAGTCTTACAAGGGTAAGGAGGTATTAGTAATATTCATTTAAATGAATTTTTTGTCAGGAACTAGTCTGGCCCTCTCTTGCCTATGCAACTTATTTCTCCTTGTGGCCCCCAAACACCTGTTAATCTCCATTTTACTATGCTCTTAAATGTTTTCCAAACATAAGATTTTTTTTTTTTTTATATGGAGTCTCACTCTGTTGCGCAGGCTGGCATGCAGTGGTGCGATCTCAGCTCACTGCAACCTCCACCTCCTGAGTTCAAGTGATTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGTGCCCACAACCAGATCCAGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCACCTCAGCCTCTCAAAGTGCCGGGATTACAGGCATGAGCCACCGTTCCTGGCTTATACATATGATCTTATTTCATGTGTTCCTGAGTTAACGTCGCATAAGTCACTATGAAGTGACTTTTCTTATGTATTCCCCACCATTGCTATGAAATTCCAACCCCAAGCATCTGCTGATAATCTTTCACTTGCTTTCATGCATTTAAAGATGCATAAATATGAAGGTCACTAAAGATTCTAGAATGATGTTCAATAATTGGACCTTTAAAGATCCTGTAGTAAATTGGAAGCAGAGATGGAGGAAGCAAGATATGAAAATGAAATTCAAGACTAGTGTTGAGTCATGAGTAACAAGTGCGTTAGAAGTGCAGGATTTGATGGTCAGGATGAGTTCAGGATTGAAAATCTCTGGTGGTACAACTAGGAATTCATCCTTGTATAGATGGCTTATCCCAATGCTTTTAAGAAAATCCTTCCTTTTGGATATATGTGGTCCTCTGTCTTCCTGTCCTGAAAATAAAGCCAACTAGATGGAGAGTGAAAGCCCAAGCTACAGGACTCTTCCTCTAAGCATGAGGAAACTGATGTTCTGAAAAAGTCACTTTAGTAATTGACACCTAGATTGCTGTGGATGGATGAAGAGGAAATAAAGTAGAAGTTTGTCTGCTAAATGCTAGGAATCCTAGCACAGTAATCTAGGTTTGAGGGAATAAAGACCTATACTTCAGCTCCTTCTTTCAGTTTAATCTTTTCCATGTATTCCAGGGGACACTGTTGTCCAGTAGTTTTTCTTAACTTGCTTACTGTTCATGGTCCTTAAGGGGCTCACAGTATTCTCTATACTTCCCACACTCCCGTTCAGCAACACTTCGAATGTCCTATGTTCTCCTCTCCCGGTTCTTTTTTTGTCTTTAACTTTCACCTCCAAACTCTTATGGTCACATTTGTAAAAATGTCAGAGTACATGGGTCTACAAGTAGAATCCTCCTTCTGTGTGTGACAGCAGTTTTCAGTGTTTGTTTTAGGTTTTTTTCCCAAAACAATGGGCTAGAGGAAATTTGCATTTGAGGTTCTTTCATTATGAGAAATTGGCCTGAAGCCTAAGAATCAATGCTATGACAATATTAATGTGTAGTATTTATAAAGTATTACATTTTTGGTTCCCTTGTAG
Seq C2 exon
AAGACCTATGGAGCATTCATGATCTAGAAGCAAGATACCAGGAAAGCCAAGCTGGAAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175395-ZNF25:NM_145011:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.330
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)