HsaINT0186585 @ hg38
Intron Retention
Gene
ENSG00000175395 | ZNF25
Description
zinc finger protein 25 [Source:HGNC Symbol;Acc:HGNC:13043]
Coordinates
chr10:37953695-37957115:-
Coord C1 exon
chr10:37957020-37957115
Coord A exon
chr10:37953759-37957019
Coord C2 exon
chr10:37953695-37953758
Length
3261 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CATTTTTGGTTCCCTTGTAGAAG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTTACCATGTGAATAAGCCAAATGCAGTCTTCAAGTTGAAGCAAGGAAAAGAGCCATGGATATTAGAAGTAGAATTTCCACATCGGGGCTTCCCTG
Seq A exon
GTGAGTTAGAAGAAATTATATCCCATGTTACTGGTGAGTAGTTGGTGCCTCTTGCCTTCTGAAGTACTTTTCGGCAATCTCTCACTTTTTTTTTTTTTTTTTTTGAAACAGAGTTTCACTCTTGTTGTCCAGGCTGGAGTCCAATGTTGCCATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTCCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTACCACCAGCCTGGCTAATTTGGTACTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCCAACCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGTCACCGTGCCCGGCCTCAGCAGTCTCTTTATAAATGCCCTGTAGTTTTGGAAGCGATTAAGGACACTTTATTTGCACGTGTAAAAAAACCTAATTCACACCTCCAATTTTTGTTCTCTCCACTTAAATTCTCTTCTTTGCTAGACATGTTTTAAATAGATTTACTTCTCTTTCCTGTATACAAACTCTTATCTCTCCTTACCCTTGTAAGACTTTGTCTTTTTGTCTAGAATCGCCAGTTACTCCCTGCCATTAGAGTATGCAACTATAAAGTGTTTGTAAATCTGACTTATAACGTTTTTAAATGGCATCGCCTTCCTTTTATTAACAATAAAATACCTCAGTTATTTTGGCACCACTTTTAACTTCCCATTTTTTCTTTAAACTCTGAGCTCAGATTAAAAATCGGTATGCTGCTCATCAATTCTTTCATTTTGGAGTTGCTACTTCCTGCTATACAGTGTTTATCCTTCCCACAAAGCACTGCTTATCCTCCCTAAACTTATTTGGATAACACTAAGACAATCTCATCCTGCCTTCTTAAATGTTTGTCACGTATTTTCTAACTTGTGCACAGATGTGTTGCCAGTATCAGGAACAATGCCTAGTACATATTAGTTGCTCGCTAGATATTTGTTGAAAGAATGAATATTAATTAACAAGAGACTGGCTGGGAGTGGCGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGTGGGTGGATCACTTGAGGCCCGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCTTGGTGGTGCACACCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCTTAGGCATGAGAATTGCTTAAACCCAGGAAGCAGTGGTTACAGTGAGCCAAGATCGCCCCACTGCACTCCAGCCTGGACAACAGTGAGACTCATGTTCATGAAAAAAAGAAATAATAAATATATAAAATAATTAACAACAGACACTTTCTACTTTCTGCTCTGTTCCTTTTATTAACTCCTGTAGAAGCTCATCCATTCTTAAAGCCAATGCATTGGTTTTTATGATAAGGATTCCTAAAATTGACCTCTCCAGCATCTTTGCCCTATTTATATTCTGATCCCATATTTTTACCTTCTTGTAAGATAGTTCTGCTTATTCTACTTCCTTCCTTGTTAGGGTCAAAACAAAAATTGTTGATTTAAATTCCCACAGTAGTTGTGTAATGCAGCAGATGTACATTGCCAGAAGCCTGCATGGTATACTTAATACTGACTCAGTATTAAGTCCTTTAGACAAAATAAAAGTCTTACAAGGGTAAGGAGGTATTAGTAATATTCATTTAAATGAATTTTTTGTCAGGAACTAGTCTGGCCCTCTCTTGCCTATGCAACTTATTTCTCCTTGTGGCCCCCAAACACCTGTTAATCTCCATTTTACTATGCTCTTAAATGTTTTCCAAACATAAGATTTTTTTTTTTTTTATATGGAGTCTCACTCTGTTGCGCAGGCTGGCATGCAGTGGTGCGATCTCAGCTCACTGCAACCTCCACCTCCTGAGTTCAAGTGATTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGTGCCCACAACCAGATCCAGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCACCTCAGCCTCTCAAAGTGCCGGGATTACAGGCATGAGCCACCGTTCCTGGCTTATACATATGATCTTATTTCATGTGTTCCTGAGTTAACGTCGCATAAGTCACTATGAAGTGACTTTTCTTATGTATTCCCCACCATTGCTATGAAATTCCAACCCCAAGCATCTGCTGATAATCTTTCACTTGCTTTCATGCATTTAAAGATGCATAAATATGAAGGTCACTAAAGATTCTAGAATGATGTTCAATAATTGGACCTTTAAAGATCCTGTAGTAAATTGGAAGCAGAGATGGAGGAAGCAAGATATGAAAATGAAATTCAAGACTAGTGTTGAGTCATGAGTAACAAGTGCGTTAGAAGTGCAGGATTTGATGGTCAGGATGAGTTCAGGATTGAAAATCTCTGGTGGTACAACTAGGAATTCATCCTTGTATAGATGGCTTATCCCAATGCTTTTAAGAAAATCCTTCCTTTTGGATATATGTGGTCCTCTGTCTTCCTGTCCTGAAAATAAAGCCAACTAGATGGAGAGTGAAAGCCCAAGCTACAGGACTCTTCCTCTAAGCATGAGGAAACTGATGTTCTGAAAAAGTCACTTTAGTAATTGACACCTAGATTGCTGTGGATGGATGAAGAGGAAATAAAGTAGAAGTTTGTCTGCTAAATGCTAGGAATCCTAGCACAGTAATCTAGGTTTGAGGGAATAAAGACCTATACTTCAGCTCCTTCTTTCAGTTTAATCTTTTCCATGTATTCCAGGGGACACTGTTGTCCAGTAGTTTTTCTTAACTTGCTTACTGTTCATGGTCCTTAAGGGGCTCACAGTATTCTCTATACTTCCCACACTCCCGTTCAGCAACACTTCGAATGTCCTATGTTCTCCTCTCCCGGTTCTTTTTTTGTCTTTAACTTTCACCTCCAAACTCTTATGGTCACATTTGTAAAAATGTCAGAGTACATGGGTCTACAAGTAGAATCCTCCTTCTGTGTGTGACAGCAGTTTTCAGTGTTTGTTTTAGGTTTTTTTCCCAAAACAATGGGCTAGAGGAAATTTGCATTTGAGGTTCTTTCATTATGAGAAATTGGCCTGAAGCCTAAGAATCAATGCTATGACAATATTAATGTGTAGTATTTATAAAGTATTACATTTTTGGTTCCCTTGTAG
Seq C2 exon
AAGACCTATGGAGCATTCATGATCTAGAAGCAAGATACCAGGAAAGCCAAGCTGGAAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175395:ENST00000302609:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains