MmuINT0180035 @ mm9
Intron Retention
Gene
ENSMUSG00000072623 | Zfp9
Description
zinc finger protein 9 [Source:MGI Symbol;Acc:MGI:99210]
Coordinates
chr6:118415853-118416938:-
Coord C1 exon
chr6:118416846-118416938
Coord A exon
chr6:118415917-118416845
Coord C2 exon
chr6:118415853-118415916
Length
929 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
AATCTTGATTCGTTTTGTAGATA
3' ss Score
6.89
Exon sequences
Seq C1 exon
GTTATCGTGTGGTTAAGCCAAGTGTGATTGCAAAGTTGAAGAAAGGAAAAGAGCCATGGCCATTAGAAGAATTTTTCCGTAAGAGCCGTGGTG
Seq A exon
GTGAGTTAGAAAAAAATCATGTTGCACGTGACCCTTTGAAAGATCTATTAAAAAAAAAAAAAGCTGGGCATGGTGGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAACCAGGGCTGCACAGAGAAACCCTGTCTAAAAAGAAGGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAAGAAAAAAAGAGAAAGATCTATCAAGAATGCCTTTTGAAATAGTTAAGGAATCTTCCTAAATCCTCTATAGTTCTAGAAATGGTGGAAGATACTGTCTACTTATATTTAAATCCTAAATCACACCAACTTTCCTTCTCTCCATGTAAATCTCTCTTTTATTAGACACTTTTATTTTTTAATAACATATTTTTATTTCACGTACATTGGCAATTTGCCTGCATGTATGTCTGTATGTATCCCTGAAATGGGAGTTATAGACAGTTGTGAGCTGCCATGTAGGTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGAGAAGGGTGGGGAGTGAATGCCTGAATGCCTATGGCCCTCTAGATTTCTCTATTCTTATGCAATTTAAGACCAGAACCCAGGTAGCAGCGCCTCTCACATTTAGATTACTTCTTCCACATCCATTGACATAATCAAGATGTGTCTACAGGTCAGCAGATCTAGCTGACCCATCTTTGAGACTCTCAAGATTATACAATGGTATAGAGGACAATTTCATTTGAGAGTGCTTCCTTCTTGATGCCCTTTCCTGAAGCCTAAGAATCAACCGTTAGCCATGATGGTGTGTTAAAAATCTTGATTCGTTTTGTAG
Seq C2 exon
ATAAGCGGCGGACCGCTCACGACCCCAGAGCCAAACATCAGGAGCAACAGGCTGGAAATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072623-Zfp9:NM_011763:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: