HsaINT0187061 @ hg19
Intron Retention
Gene
ENSG00000188283 | ZNF383
Description
zinc finger protein 383 [Source:HGNC Symbol;Acc:18609]
Coordinates
chr19:37726881-37734574:+
Coord C1 exon
chr19:37726881-37726976
Coord A exon
chr19:37726977-37733370
Coord C2 exon
chr19:37733371-37734574
Length
6394 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACCATTTTATTTTCTTTCAGATC
3' ss Score
12.04
Exon sequences
Seq C1 exon
GACTTTACACTCCTAAGCCTCAAGTGATCTCCTTATTGGAACAAGGGAAAGAGCCCTGGATGGTTGGCAGAGAGCTTACAAGAGGCCTGTGTTCAG
Seq A exon
GTAAGTGAGAAATGACCGGACAGGAGAAAGTCACGATAGGTCAGAACTCAGCTGGTCAGGGAGGAAACAGCACCTTTGAGATGTTATCCCTGAAGCTCCCATCAAGAAACTAGGCCAGTGGAGAAAATGAAGTCCTTTTAGCATAGTTGTTAAATAACCTGTTTCGCCCTTTTCCTCACTTACCACTATTTCTACTACTCCTCTCCAATCCTCCTCTTAATTTCAAGCAGAAGGTACCTTTTACTTCTCTAAAAAAAACCCTATTTTACCCGTATTTTAGATTCAGCTGCTTGCTAGCTTTTTTTACTCTCTCTCTTTTTTTTTCTTTTTTTTTAAAGGGTCTGGCTCTGTCACCCAGGCTAGAGTGCAGTGACATGATCATAACTTATTGTAGGCTCAAACTTCTGGGCTTAGGCAGTCTCCCTGCCTCAGCCTTCCAAGTGGCTGGGACCGTAGGCCTGTGCCACCATGCCTGGCTAATTCTTTTTCTTCTTCTGCATTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCCGTCGCTCAGGCTGGAGTGCAGGGTGCGATCTTGGTTCACTGCAACCTCTGCCTCCCGGGTTCAGGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCATGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCACCATATTGGCCAGGCTGTTCTTGAACTCCTGACCTCATGATCTACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGTCCGGCCCCTCTTCTGCATTTTTTAGACTTGTACAGGTGTTTTCTACTACCACTCCCCAAAATAATATAATTGCGTCTGTATACACACATGTGAACACACACACACACACACACACACACACACACACACACACAGAGACACACACACACACACCCCTTGCCCAAGTACTGGTCTTCATTATAGCTGCCTGTCAGTGACCTGTTTTATCAGACTGTCTTCAATGTTTCCTTTATGGAACGTTTTTTAATTTCCTGGTTTGTGTAAGGGAATCTTCCAGGTGCTACAGTTTACTAATTGTGTTACCTTTACAAATTCAAGGTCCAAAAGTGGTGCTAAAATATATACATATATGACTTCCACAAAGTAGAGTAGTATAAAAGAGAAATGAGATAAGGAGTTTAGCAGAAAGTCAAAGGCTAACTATGTAGAAGTGGAATTAATCCCTATTGAAGTAGTAGGTGGAGCCTTGGAAGTGACTGCAATCACTATGTATAGAGATATTGTTGGGGCCAAGAAAAAAAAAGGATCTGTGCCTATATTAAAAAGGAAGAGGTGGCAGAGCAGGAGAGATTTGGGATGAAGTAGGAGAACCAGAAGAGTACTTATTGAGCACTACTATGTACCAAGCATTGGTCCAAGGGCTGGGACTGTAGTATTCATGAAGGCATTCTAAAGTTCTGCACTTCTGAAGCCTACATTCTAGAGGGTAAGAGAGAAAATGTCTTAGTCCATTTTGTGCTGTTACAGCAGAATACCTCACATCGAGTAATTTATAAAGAACAGACATTTATTTTCTCATAGATCTGGAGGCTAAGAATTCTAAGATCAAGGCACTGTCATCTGATGAGGGCCTTCTTGCATCTTCGTGTGGCAGAAGGCAGTAGGGCAAGAGAGCCAACTCCTTCCATCAAGCCCCTTCGTAAGAGCACCGAAACCCATCCTTGAGGGATGGGTCCTTGAAGCCCGATCATCTCTTAAAGGCCTCACCTCTTCGTTTTTGGAATTTTTTTTTTTTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGCGGCACAATCATGGCTCACCACAGCCTCAACCTCCCGGGCTCAGGTGATCCTCCCACCTCAGCCTCCCGAGTAGCTCGGCCCACAGGCACACGTCACCACGCCCAGCTAATTTTTCTATTTTTTGTAGAGACAGGGTTTCGCCATGTTGCCCAGGCTGGTCTCTAACTCCTGGGTTCAAGCGATCCACCCACCTTGGCCTCCCAAAGTGCTAGGATTAAAGGCTTGAGCCACTGTGTCTGGCCCCCACCTCTTAATACTATCACATTGGCAACAGCTGAATTTTGAAGGAGAGACATTCAAACCATAGCAGAAGATAAACATGAATGTCAAGTATATATGTATAAAACAATATTAGCATGACATTAATATTATATGATATATAAATATTTTTAGAATTATATATCACTTACATTTATCTACATGTAACTAATATATTGGTATAGTATAAATATATATCATATATTAATAATATTTCTATATTATTATATGTCCATGTGTATATGAAATGTCAGGTGGTGGGTGATAGATAAGTGCTGTGAAGAGAGGCTAGAGAGGGCCTCTCTGATGAGGTGTTCTTTTAGTGAAGACTTGAAGGAAGTGAGGGAACAGGTAATGTAAATATCTGCTAGGAGAGATTCAGGCAAAGGGAACAGGAAGAGCCAAGTACTCGAGTTCAGAGCTTTTTGGCAGCCACCATTATGGCTGAAATTGAATGAGCAAAGCGGGAATTGTAGAAGAGGAGATCAGGAAAGTAGCAGGCTTATGAGTGTTTGCATGCTGGGTGCAGGTCAGGATGGGAGTTGGATGTACCTGTAGATGATTTTGGGTCTTGTGGACCTTGAATTTTACTCCGAATGAGGTGTAAATCCATTGAATGATTTAGCAGAGTGATATTATCATGTTTGCAAAGGATCATTCTTGCTCTAGGGGTTCCTAACTTTGGATTCCTTTAGGTAGAATTCAGGGAGTCCATGAACTTGGATGAGAAGAAAAAAATACATCTTTTTGGTTTTTTTTGAGACGGAGTCTCACTCTGTCACCCAGGCTTGAGTGCAGTGGTGTGATCTCAGCTCACTGTAGCCTCCACCCCGCAGGTTCAAGCGATTCTACTGCCTCAGCCTTCTGAGTAGCTGGGATTATAGGCGCCTGCCACTGCGCCCGGCTCATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATCTTTGCCAGGCTGGTCTTGAACTTGTGACCTCATGATCCACCTGCCTTGGTCTCCCAAAGTGCTGGGATTACAGGCATGAACCACTGTGCCCAGACCAAAAATACATCTTTATATTTAATAACCTCTAATTGAGATATAACATTTCTTCCTATCGTGATGTATGGGACAAACCATAGTAGCAGTAGTAGTAGTAGTAGTTACTGTGACTTTGACATTAATGGAAATCACAGATACGTTCATATTATTTTACTGTTATTGTAGGCATATTGAAATATTTATGCTCATCACTACTTCAGAATTAATGTAGTACTAGGCTTGCCACTAGGTCTTGTTTAATGTTTTACTAGAGAAGAAAACTCCAGGCAGAGAGAAGAACCCCTGTGAAGGTTCTGATGGGGAAAAGCTTGGTGTGTTTGAAGGACTAAATGCCAGTGTTGGTGGGCCCCATGATCAAGTGGGAGTGGAGTGTGAGTCAGGGTTTGGATAGACAGGCAGGAGCCACAGCATTCAGCCTTTGCAGGAGATTGTAAGGAGTTCGGACTTTGAGCAGTGGAAACCTAAGCCAAATGATACTATTCCCTGAATAGATTAAAGGGTGAGAGAGCTTGGTGGGGAGACTGGTTGAGGAGGCTACTTCACTGGTCTGGGTAAGAGTTGATTCTGGTTTGGAAGATGACATTGGCAGTGGAAGACAGAAGAGGGCAGTTTCAAAACTTTACTTGGGAGCTTAACTAGATGAAAGTTACTGCAAGATCTGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCCAACATGGTGAAACCCCATCTTTCCTAAAATACAAAAAAATTAGCCGGGCGTGGTGGTGCACGCCTGTAGTCCCAGCTACTTGGGAGACTGAGGCAGGGGAATCGCTTGAACCCTGGAGGTGTAGGTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGCAACAGAGTGACACTGCGTTTCAAAAAAAAAAAAAAAGTTATTGCAAGAGCATATAGAGATAGGAGGAGAAAGATTGTGTTGGAATGAATTCCCTGTTCCTGTTTTGAGATACTCCAATAGGCTTCATTTTGATATCTTCAAACCATTTAATTTGCCTAATATCCCCATTTTTAGTAAGAAATTGTTTCATAATACCTGAACACTTTACTCCAAAACATGTATATACATTTTCCTGTAACCCCCCAGTAATCATGAGTTAAGGATTATTGCCCTTTTACAGATGAAGAAATGGTAGCTTAGAGATTAAATAATTGCTTGTGAGCACACAACGATTAAGTATCAGAATTGGCAGTCAGCTCTCATCAATCTGCTTCTGGTTCCTGTTATCTTTCTATGGCAGTATGTTGTACTGTGTCTTAGTTTCTTTCCATCTTCCTTAAACTTTAGCTCCTTCTCTCTCATTCACTGTGGTGGTACATAAGCAAGTCTCCTCTCCCCTAAGATCAGCATCTCAAAATTCCAAGGCAAACAATATTTCCATTGAATCCCCAGCACATAAAATAATTCTGAGTTTTCCTATCTGCCACTTACACACCTACATCAAATTAGTTCAATACATTAGACTTACATCTGTCTCTTCCCTCATGTGAATAACCCGCTGTTACCAATTCCTTTTTTTTTGTTGTTTTGAGATGGAGTCTCACTCTGTCACCCAGGTGGAGTGCAGTGGTGCGATCTCAGCTCACGGCAGCCTCTGCCTCCTGGGTTCAAGCAGTTCTTCTGCCTCAGCCTCCGGAGTAGCTGGGATTACAGGCACGTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGCTGGCCAGGCTGGTCTGGAGCTCCTGACCTCAGGTGATCTGCCCGCCTCGTCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCCAGCCACCACATTCAAATTGTATCCACTGTATCCTTTATTAAAGACCTTATTCTGTTTCCACCCCAACTGGGTTTGCTGCAGTTCACTTCTGACACTATTCAGGATGTGGAGACCTCACAGTCTTCCATAGTACTGTCCTCACCTCAGATGCCAGCTGCAAGTCTTGGGAGTCCCCCGGCTACCTGCAGGTCAGCCAGCTAACAGCAATAAATTAAGGGGTTTCCAAGGTCTCAGGTTCAATAATTTGTTAGAATGACTCATAGAAATCAGGAAAGCTCTGTATTTAAAGCTACAGTTTTATTAGGATACATATTTGAGCAAGATCTGGAACTGGACAGTTTCCATGCCCTCTCCCTGTGGAGTCAGTTTGTCACTCTCCTATCACATCAGTGCATTTACCAACCAGAAAGCTCCACTGAATTTACTGCCCAGCATTTTTATTGAGGTTTTATTACACAGGCACAATTGATTAAATCTGTGCCACTCAATCTCTAGCCTCTCTACACTTCTCAGAGGTCAAGCAGCTGCAAGTCCCACCCTTGTAATCACAAGCTAGTGTTTCTGGTAATCAGACCCCACCCTGAAGCTTTCTAAGGTCCTACCATGAATTACCTTATTAGCATAACAAAGACCTCCTGTCAGGAAATTCCAAGTGTTTTTGAAGCTCAGTGTGGGGCTTTATTATACCTCAGAGCCAAAGAATCTTCCCCATATGCATTTATTTCTCTCAGGAGACCTTTAATGGAGGCTAGAAAATGATCCACTTCATGTTACACATATTGTATGATATACTTATCTCTTATGTACACACGCATACTTATATAGATATATGTATATCATATATATCTATATAAGTATATATATACTATATAGTATGTCTATATATACTATATAAATATATATACTTATCTATATATACTATAAAGATACTATATATAGTATAGATACTATATATACTATATAGATACTATATATAGTATAGATACTATACTATATATAGTATAGTATCTATATATACTATAAAAGTATACTTATGTACATATATATGGCCAGTCATGTTTTAATATGGAAAATAGCCCAACCATTGTATATTTACCAGCCTTTCCAGTTGATTCTGATCCACATCCATATTTGAGTATCATTGTAGTAACTTATTTGCGTAGTTACCTTCCTCTGCTTCCTGCATTATCTTACTAATTTCTTTGTCTTTCTTGTCCATTTTTTCAGATAACACAGATATCCTTGTGAACCCTGTGTCATTTACCTAGTAGATACTATTCTTACTTTAATTTTTCCATTTCTATTATAAAAGTTTAATTTTTCACAAATAGGAAAAAAGAACATTTACCATTTTATTTTCTTTCAG
Seq C2 exon
ATCTGGAATCGATGTGTGAAACCAAGTTATTATCTCTAAAGAAGGAAGTTTATGAAATAGAATTATGCCAGAGGGAGATAATGGGACTTACAAAGCATGGCCTTGAGTACTCCAGTTTTGGAGATGTTTTGGAATATAGAAGCCACCTTGCAAAACAACTGGGATATCCAAATGGGCATTTTAGTCAAGAAATATTCACTCCTGAATACATGCCCACATTTATTCAACAGACATTCCTTACTCTCCATCAAATAATTAATAATGAAGACAGACCCTATGAATGTAAGAAATGTGGAAAGGCCTTTAGTCAGAACTCACAATTTATTCAACATCAGAGAATTCATATTGGTGAAAAATCTTATGAATGTAAAGAGTGTGGGAAATTCTTTAGTTGTGGTTCACATGTTACTCGGCATCTGAAAATTCATACTGGCGAAAAACCCTTTGAATGTAAGGAATGTGGAAAGGCCTTCAGTTGTAGCTCATACCTTTCTCAACATCAGAGAATCCATACCGGTAAGAAACCCTATGAATGTAAGGAATGTGGGAAGGCCTTTAGTTATTGCTCAAATCTTATTGACCATCAGCGAATTCACACTGGTGAAAAACCTTATGAATGTAAAGTATGTGGGAAAGCCTTTACTAAGAGCTCACAACTTTTTCAGCATGCACGAATTCATACAGGTGAGAAACCCTATGAATGTAAGGAATGTGGCAAAGCCTTTACCCAGAGCTCAAAGCTTGTTCAACATCAGAGAATTCATACTGGTGAGAAACCCTATGAGTGCAAGGAATGTGGCAAAGCCTTTAGTAGTGGCTCAGCACTTACTAATCATCAGAGAATTCACACTGGTGAGAAACCCTATGATTGTAAGGAATGTGGAAAGGCTTTTACTCAGAGCTCACAGCTTCGTCAACATCAGAGAATTCACGCTGGTGAGAAACCCTTTGAATGTCTTGAATGTGGGAAGGCCTTTACTCAGAACTCACAACTTTTCCAGCATCAGAGAATTCATACAGATGAAAAACCATATGAATGTAATGAATGTGGAAAGGCCTTTAATAAATGCTCAAACCTTACTCGACATCTGAGAATTCACACTGGTGAAAAGCCCTATAACTGTAAGGAATGTGGGAAGGCTTTTAGTAGTGGCTCGGATCTCATTCGTCATCAGGGAATTCATACTAATAAATAATAAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188283-ZNF383:NM_152604:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)