MmuINT1035579 @ mm10
Intron Retention
Gene
ENSMUSG00000099689 | Zfp383
Description
zinc finger protein 383 [Source:MGI Symbol;Acc:MGI:1920979]
Coordinates
chr7:29912590-29916807:+
Coord C1 exon
chr7:29912590-29912685
Coord A exon
chr7:29912686-29914616
Coord C2 exon
chr7:29914617-29916807
Length
1931 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
CTGCTTGTCCTTTCTTTCAGCTC
3' ss Score
11.26
Exon sequences
Seq C1 exon
GACTTCACATTCCCAAGCCTCAGGTGATCTCTTTATTGGAGCAAGGCAAAGAGCCCTGGATGATTGGTAAAGAGCTTACAAGAGGCCTGTGCTCGG
Seq A exon
GTAAGTGAGAAGCATTGCGCAGAGCGGTGCCCACGGGGACAACTCGCTGGTAATCCAGGAAACTGCACCTTTCCCATGTTATTTTGTTTTTTTTTTTTTTTTTTATTTTTATTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGAGAGTCAGATCTCCTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCTGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCGTTATTTTGTTTTAAAGAGTATTTCCTAATGTTATGTAGACGAGTGCTCTGTCTGCATGTACACCTGCGTGCCAGAAGAGAACATCAACTCCCATTATAGATGGCTGTGAGCCACCATGTGGTTGCTGGAAAGTGACCTCTTAACAGCTGAGCCATCTCTCCTGCCCATTGGTTGTTATTTTGTAAGCTTCTGCCAAAAACTTGGGTCTAAGTGAGAAAAGCAAGTTCTTTTTTTAAAAAAAGAGCATTATTATTATTATTATTTTGTTTCATGTATTGATTGATTGATTGATTGATTGCATGGGGCGAATTGGGGGGGGTCAAAGGACAACTGTGAGAGTTCGTTTTCTCTGTGCATGGTGTTGGTCTGGGGATCAGACTCAGGTCATCATTGGTTTTGTTTTCACATAGGAACGGTTTTATAACTGGCTTATCAGTCTTTACCTTCTCTTGTCCATCCAGAGGTCGGATGCCTAAAATCCCAACCTCCTAACAACCTGAGTTACCCTCTGGTGACCAGGCTCAATACTAGAGCTTTTCTCTTTCTTTTAAGATTTGTTGTTTTATATGTATGGGGTATGTGTGCACCAGATGTGGTATTTTATATTCATGGGCCTGAGTGTGTGTGGTATGTGTGCACCACCAGTTGTGGACTGGTGCCCACGGTCAGAAGACCTGATAAAATCCTCTAGAACTAGTCACAGGTATTTGTAAGCAGCTATATGGGCACTGAGAACTGAACCGCAGTCCTTTGCAGTAGCAGCACACATTCTTAACTGCTGGGCCATCTTTCCAGAACCAGTCCTGAGGCTCGTTAAGGCCGATCATGAATTGCCTCAGTAGCACCACAGAACTGCTGCTGTCATTCAGAGAATCTCAAGGTTTTTTGAAGTTCCATGGCAGAAAACCAGGACAAAGATCAGTGTGGCAGAACATGTTTATAATCCTAGCAACTAGAGAGACTGGGGCAAGATAATACAGAGTTCAGAACCAGGCAGAGTTACATAGTAAGACCTTGTCTCGGGAGACATTCCTTTCCTTTAATCCTTGCACTTGGGAAGCAAAGGGTCTCTTGAGTTCAAGACCAGTCAGGGCTAGATAGTGAGACCTTATCTCTGAACAAACAAAATGAGCAGAAGACCAAATGTATTATTTGGGGTTTTTGTTTGTTTGTTTGTTTGTTTTTCGTGTCTTGTACCCAGTGCTTTTTTTTCTCCAAACTATTCTGACTTACATCCACATTTAAGAGTCATTGTAGGAGCATTGGCGGTGCGCGCCTTTAACCTAGCACTGAGGAGGCAGAGGCAGGCTGATCCCTGTGAGTGTGAGGCCAGCCTGGTCTATAGATCAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCCAAAACAAGACAGTGCTTGTTGGTAACTTATTTCCTCCATGGTGGTCTCTGCCTCCACGGTGCATCTTGTTAATTCCCTGTGCTCTTTGTCCATTTCCGTCATAGATCTCCGTAAGCCTGTGTCATTTACTTACTAAACAGTATAGTCACTTCCTTTTTTTTTTTTTATCCCAGTATGAAAGTTTAAAGCTTTTCCAAATAATAGAGGAAAAAAATATATTTGCTGCTTGTCCTTTCTTTCAG
Seq C2 exon
CTCTGGAGTCAATGTGTGAGAGCAAGTTATTATCTCTAAAGAAGGAAGTGTATGAGATCGAGTCCTGCCAGAGGGAGCTAATGAGACTTTCAAAGCACAGCCTCTCGTGCTCCGGTTTTACAGATGCTCCGGAATGTGGAGGCCAATTTCAAGGTGGACATGGAAGCCAAGAGTTACTCACTCGGGAATACATGCCCACATTCTTTCAGCAGACCTTTTTTACCCTACATCAGATTATTAATAATGATGAGAAACCCTACGAATGTAAGAAGTGTAAAAAGGTCTTTACCCAGAACTCACAGTTTATTCAACATCAAAGAATTCATATTGGTGAGAAGTCTTATGAATGTAAGGAGTGTGGGAAGTTCTTCAGTTGTGGGTCACATGTTACTCGCCATCTGAAAATTCACACTGGTGAAAAGCCCTTTGAATGCAAAGACTGTGGGAAGGCCTTTAGTTGTAGCTCATACCTTTCTCAGCATCAGAGAATCCACACTGGTAAAAAACCTTACGAATGTAAGGAATGCGGGAAAGCCTTTAGCTACTGCTCAAATCTCATTGACCATCAGCGAATTCACACTGGTGAGAAGCCTTATGCCTGCAAAGTATGTGGGAAAGCTTTTACAAAGAGCTCACAACTTTTCCAACACGTGCGAGTTCATACAGGTGAGAAACCTTATGAATGCAAGGAATGCGGCAAAGCCTTTACGCAGAGCTCGAAGCTTGTTCAGCATCAGAGAATCCACACTGGAGAGAAACCCTATGAGTGCAAGGAATGTGGGAAGGCCTTTAGTAGTGGCTCAGCCCTTACAAACCATCAGAGAATCCACACTGGGGAGAAACCCTATGAGTGCAAGGAGTGTGGGAAGGCCTTCACTCAGAGCTCACAGCTTAGGCAACATCAAAGAATCCATGCTGGCGAGAAACCTTTTGAATGCCTGGAATGTGGAAAGGCCTTCACCCAGAACTCACAGCTTTTTCAGCATCAGAGAGTCCACTCAGATGAAAAACCTTATGAATGTAATAAATGTGGGAAGGCCTTTAATAAGTGCTCAAACCTTACTCGGCATCTGAGAACTCATCGCGATGACAAGCCCCATAGCTGTACCGAATGTGGGAAGACGTTTAGTAATGATTCAGACCTCATTAGCCATCAGGAAACTCATACTAACGAGTAATAAAACTTCATGCTTGACAGTTACTCTCTGGCATTGTTTGACTAGATATTTACATTTTCATCTGAATTATTTGGCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGTCTTCTCCCACATCACTGCTAGTTGCTTATTGGGTTTTGTTCACCTCTTGCTTGGGGGTCTGCCATACTGTGTTTATGTTTGCTCATAGCTCTAGGCCTGTCTTTTGTTCTCTAAACTGTGTTTCTGAAGCTTGCACTAATAGCAGCATTTTAACTGTGTAAGCTTCATGAGTTAAGTCCTTATAGAGCCCCAGGGTGGATCTGAGGCGGTGCTGGTCGGTCCTACTGCTGTGTCTCATGAGCTTGTTTTTATTTTTATTATAAGTGGGGGCGGGCGGGGGGGGGGGGAGAGAAAACTAGAAAATCCAAAGCTCAGACGTGAAGATGAACTGTGATTGTGTTGATTATAGATGACGACTATCAAATCGGTAGAACGCGTTCTGCGGAAGATGTGTGTAGTTCGTGTGTTTGTGTTCCTTCTGCATCTGCTTTTGTCATGTTAGAAAATCATTGTTGTAATTGCTCTTTCAGCAAATACAGATTCTAATTTTAAAGATTTACTTAATATCTGTTAATGACTATTATTCATGTTATGGTTGCTTCTGAATTTTTGCATTTATGAAAGCTGTCTCCATTACTATGCCTCCAAACTTAAATTTGGATGTCTGATGTTTTGTTTCTCCTAAAAATGAGAACATTTAATGCTGAATTTATTTTCTCCTTGTATGCTATTTTGTTCCTTTTCATTAACCCTAATCCTAATGTCTTGTCAGAAGGATAATTACAGTTAGGAACATGTTATTCTTCCAGATTATTTTCTTATCAGTAGTTGTTTTTCTTTTACATATTCAGTCATGTGTACGTATTGGTTTGCCATGAGAACTCAATGAACTCATAAATAGAACTTATAGATCTATTCCTAGCATATATGGGTTTAATAAAAGGTTTCTCTGTTGTCTTTTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000099689:ENSMUST00000186475:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGAGCCCTGGATGATTGGT
R:
ACTGTGAGTTCTGGGTAAAGACC
Band lengths:
353-2284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types