BtaINT0165737 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004939 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
Coordinates
chr18:47619376-47629644:-
Coord C1 exon
chr18:47629549-47629644
Coord A exon
chr18:47621196-47629548
Coord C2 exon
chr18:47619376-47621195
Length
8353 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TTATTTGCAATTTCTTTTAGGAG
3' ss Score
9.37
Exon sequences
Seq C1 exon
GATGTCCATTCACCAAACCTGATGTGATTTTCAAGTTGGAGCAAGAAGAAGAACCATGGGTCATGGAGGAAGAAGTGTTAAAGAAACATTGTCCAG
Seq A exon
GTTAGTGAAAGGGAACCATAGAGGTGAGGAAGGGCCAAGGCCCTTTAACAGCTAATATGTAAGTTCTTGATCCCTCTGAAATATTCCAAAGGTATATTTTTTTAGGCCATAGAATTCCATACTGACGGTGTGAATTTTTTATATATGTAAGATGTCATTTTTGAAACTTTTTTTGAAAATTCACATTTTTGTTGTGAATTTAAATATCCTAACTCTGTAAAGCTTTGAAGTCAGTGGTACACTGGTTTCATAAGATTTAGAAACTTTCCTTCACATTCTTCACAATCTGTATAAAATTACTCATTGTGTTATTTATATCTTCCGTTAATTCTACAGCATTCTCAGCATCATCAAATATTAGCTCTCATTCATTGTCTTAACACTCTACCACTGAAACTCAGATAGATCCTAGACCTTTTTATTTTTTCCTCCATATTTTTAAATCTCCTGTTTTCTTCCTTTGTAGCTCTCTGCTGTCTTCTCAGTAATTACTTTAAATATATCTTCCAATTTACTAATTCTCTCTTCAATTGTGTTTATTTTAAACTCATCCACCTTTTAAAAAAATTATTTATTTTTGGCTTTGCTGGTTCTTTGTTGTTACACATAGGCTTTCTCTATTTGCAGCGAGCAGGGGCTACTCTAGTTGTGGTGCACAGGTTTCTTATTGCAGTGGCTTCTCTTGTTGCAGAGAACAGGTTCTAAGTGCACATTCTTAAGTAGTTGAGGCACATGGGCTCAGTAGTGGCTCTGGGGCTCTAGAGCTTGGGCTTATTAGTATTGTGCCACACAGCTTTATTTGCTCTGCAGCATGTGAGATCTTCCTGGACCAGGGATTGAATGCATGTCTCCCACACTGGCAGGTGGATTCTTTACTACTGAGCCACCAGAGAAGCTTAACTCATCCACCTTTGAAAAAAACTTTTAGTATAAGTATTTTGTATTTTTAGAAATTCCTTTTGTTTTTGCAAAAAATTCTCACATCTTTCTGATTCTTCCTAATAATTTCTGTGGCTTCTTCAGATTTGTGTTTTAATTTTTGCTTCTTTAAAAATACTGTACATAGCTCTTTTGTATTGTCTTCAGGTTTAAATGTCCTATTTTTGACGACTCAGTGTGTTTTGGTTCTTCATGTGCTCGATGATAGCTGATTGCAATTTGAGTTTTTTAAAATCTTAATTTATGATAATCTTCTTGTCCTAAATTGAGTTGCTTTCTTCTGAAGATGATTTACATGTGTTTCTGGTGGGCACCAAGAGGCGTTTCCAGGTAAGGATCAGTTCTTTGAAGGTAGGCTTTTGGTAGGAACCTCAATTGAACTTTTCTTCTTTATTGATAGCCCAAGAGCCTTATATTTTATTTAATAAGGCTTTGCATAGGTATTCAAGTCAGATCCATCTTCAGGCTGCTTTCAGTTCTGCTCTCTTAGTCATGGTCTTGGCTAATACTTGATTTTGTTTTGTTCACTTTTTGTGTGTGTATAGTGCTCAGGTTGTTGGAGAATACTGCAGTGTTCTTGGAGATTTAGGCTACTTCCTATAAGCCCAGTAGTGCTTCAAAATTTCAGCTGATTTTATCCACTGTCTAATTTTGCAAATGAGGTTACCCTATTGTAATTTCAATGTTAAAAATCCGTATGTAGTCTGTCTCTTTTATTCCCCCAACTTGCATGGTGTTTTTTGTTTTGGGTGATTTTATTTTTCTCTTTATTTCTTGGTTCTGCTGGTTAATCTTGTTTTAGCCCTTTTTGTTTTCTCATTGTTTCTTCCTCATGCATTTGTATTTCTATAAATATCTTTCTATATTTCTAGCTCTTGATTTATACCTGGTATTTTCACTAAGTTTTATCATTCATGGCAATATTCAGTCAAGATTTCATTCTGTATGTCATAATTTTCTTTAGCTTGAATTTTGTCTGCTTTCTTTATATCATGTTTTTTTCTTTTCTCTTACATTTTTTAAGAGATATGATTTAAATACCTTCTCATTTTTGAGTGAGAATAGTTCTTCTTAACCTGATTTTTAAAGAAGTATAATGTTAGGGAAGGAAAAACAGTTCTCAGATCTAGAGCACAAATCTGCAAACTAAACTAACAAAACTGCAAACTTTCTTTTCTGAGGAAGAAAGTTCTCAGATTTAGAGCACAAACCTGTTGGCCAGCCACTTGTTTTTGTAAATAAAGTTTTATTGGAATACATTCATACCAAGTCATTTACATCTTGACTGTTACTATTACAGAGGCAAGGTTGAATAGTCGTGTCAAAGACTATATGACTCATGAAAGTGAAAGAAAGAAATTGAAGTCGCTTAGTCATGTCTGACTCTTTGCAACCCCATGGACTGTAGGCTTCCAGGCTCCTCCATCTGTGGGATTTTCCAGACAAGAATACTGAAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCTGACCCAGGGGTCAAACCCCAGTCTCCCACACTGCAGGCAGGCTCTTTACCATCTGAGCCACCAGGGAAGCCCATATGACCCATGAAGCCTAAAATATTTGCAATCTGACCTTATTTAAGAAAAAGTTTGCCAACTCTTGATGTATAGGAGTACATCTGTGCTTCATACTAAAGCCTTTTATTCTGCATGGTTGTGTGAATATAAGTATGTTTAGGCTTTATTTCTTCTCATCCAAAAAGGAACTGTGGCTACAAGTCTCATAACTCTGAATCTTATACTCTCATCCCAAGACATCTTCCTAAAAAGATAGTATTTCACAGTGTTTCCTTGCTCAGTCCTGGTTTCCTTGACATAGTTAGGGATGTCAAGTCTCCTGTAGTCAGTCTGCACTCCCTAATTTCCATGTTGTAAACATGGGTTAATTAATTCTTCCCTTCAAGGTACGGTGTCCATTTTGACAGTGTCAGCTGTTTGCTCTGCCCACAATCGGAATGAACAATTATCTTCTCTTAGAATCCTTTTTCCCCTGTTCCACCCTTCACTGTATTTGTCAACATTAACTCATTATAATTGGGGTTATAGCCACCACCTAAGATCACTGAAGCATCGACGTTTCAATTCTTGTTTGTATACAGGAAAAGAGATCAAATAGTTTGTCATTCTACCATCTTAAAACATGGAGTCTTTTCTGTCACATTTGGTATTTTGATCTTGCTCCTGGAATTTGTCACTTCTACTTGGACACTACCTTAAAGACCTGATCTTGCCTTGTCCCTCGACCTCTTTTGTTTAATTGAGCTTTTCTGTTTCCCTAAACTGAGGTGACTCAAAAGCTTAAGCTCAGTATACTATTTTCTACCAAGTCTCTAACTTCCTGCTTTCACAAGAATCTTTCATTTCCTTTATTCTCAGTCTGGCAGAGAGGAAAATGGAGATTATTTTTTCCTCCCTATTTTTGAGCTAAGCAGCCACTATGGACTGGAAGTCTTACTATTTCATGTTCCTGTGTAGAAAGAATCAATATTGGGAAAATGACTATTCTACCAAAGGCAATCTACAGATTCATGCAATGCCTATCAAACTACCAATCTTTTTCAGAACTAGAACAAAAAATTGCACAATTCATATGGAAACACAAAAGACTCCAAATAGTCAAAGCAGTCTTGAGAAAGAAGAATGGAGCTGGAGGAATCAACCTTCCTGATTTCAGATTATACTACAAAGCTACAGTCATCAAGACAGTATGCTACTAGCACAGAAACAGAATAAAGACCAATGGAACAAAATAGAAAACCAAGAGAGAAAACCACACACTTATGGGTACTGTTTTTGACAAAGGAGGCAAGAATATACAATGGGGCAAAGATAGACTCTTCGATAAGAGGCGTTGGGAAAACTGGACAGCTACATGGAAAAGAATGAAATTAGAACACTTTCTAACACCATACACAGACATAAACTCAAAATGGATTAAAGACCTAAATGTAAGACCAGAAACTATAAAACTCTTAGAGGAAAGCATAGGCAGAACACTTGAACTTAAAAGCTTTTGCACAGCAAAGGAAACTACAAACAAGGTGAAAAGACAGCCCTCGGAATGGGAGAAGGTAATAGCAAATGAAACTGACACTTTCCAAAATATACAAGCAGCTCATACAGCTCAATACCAGAAAAAAGCCCAATCAAAAAATGGGGAAGTGACCTAAAAAGGCATTTCTCCAGACATACAGATGGCTAACAAGCACATGAAGAGATGCTCAACATCACTCATTATTAGAGAAATGCAAATCAAATGTATAATGAGGTACCATCTCACACCAGTGAGAATGGCCATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTAGAGCCTATTATACAGAGTGAAGTAAGTCAGAAAGAGAGAAATATAAATATCACATGCTAATGTACACATATGGAATCTAAAAAGATGGTAATGATGAATTTATTTTCAGGGCAGCAATGGAGAAACAGACATAGAGAACAGACCTATGAACACAGGGATGGGAGAAGGGAGAGGGTGAGATGTATGGAGAGAGTAACATGGAAATGTACAACACCATATGTAAAATAGATAGCCAATAGGGATTTGCTGAATGACTCAGGAAACTCAAACAGGGGCTCTGTGACAATCCAGAAGGGTAGAATGTGGAGGGAGTTATGAGGGACGTTTGGGACAGAGGGGACATGGGTGTACCTATGGCTGATTCTTGTTAATGTATGACAGAAAACCACAAAATGCTGGAAGCGGTCCCAAGATGGCAGAGGAATAGCACTTACTGACATAAATCACAGCAAGATCCTCTATGACCCACCTCCCAGAATAATGGAAATAAAAGCAAAAATAAACAAATGGGACCTAATTAAACTTAAAAGCTTTTGCACAACAAAGGAAACTATACTCAAGGTGAAAGGACAGCCTTCAGAATGGGAGAAGATGATAGCAAATGAAATAACTGACAATTTCCAAAATATACAAGCAGCTCAACGCCGGGAAAATAAACGACCCAATCAAGGGGTGGGCCAAAGACCTAAATAGACAGTTCTCCAAAGAGGTCATATGGATGGCTGGCAAACACATGAAAAGATGCTCAGCATCACTCATTACCAGAGAAATGCAAATCAAAACCAAAAAAAAAATAAAAATAAAAATAAAGAATCTTTCATTTCCTTTATTCTCAGTCTGGCAGAGAGGAAAATGGAGATTATTTTTTCCTCCCTATTTTTGAGCTAAGCAGCCACTACGGACTGGAAGTCTTACCCTTTGGTATGTAGATTTTCATTTATTCTGTTTGAGCCAGTTCCTTATCTCTGAATTCCTCTGCCTGGTGTCCTTGATGTAGAGCTATTCTGCTTATCTTTCTCAAGAGAGTAACCTCACATATTCTCCAGGATGGAAGAGTAGTCTTTGTCTTCATTAGTTTATACCGTTTTTATACTTTGCCTCATTTTCATGTGGTTTTGGGTAGGATCAGAGATAAATTCATATATCAATTAGGCCATATTTAATTTCTCATTCTTTGTTTTCCCTTTTGCTCAGTTGTTGTTTAGTCACTAAGTCATGTCTGACTCTGTTGCAACCCCATGTACTATAGCCTGCCAGGCTCCCCTGTCCATGGGATTTCCCAGGCAAGAACGCTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCGTTACCCAGGGATCTAACCTGTGTCTCTTGCACTGGCAAGCAGATTCTTTACCACTCAGCCACCTGGGAAAGCCGCCTTTTGCTCAGTACTTACTCCCTTTTCAGTCATGCTAGGTAGGCTTTTCTGCTTTTATATTCTGATTCTTTTATCCTATTTTTACCTTCCTGTTGTTTGCTCTCATTTTATTAATTACTGTAGGGGTCAGGTGAATTTTTTAAAAATATGTAGTATGTGCTTACAGTACAGATTTTTAAAGTACAAAAGGATACATATTGAAAACTAAATTTTCTCCTCTTACCCATGTCCTCCTCTATGCTGGCAACCTGTAGTATCATTTTCCTTTAAGCTATTACTTATTTGTATTTTCAAGCATTTTTATTGAAACCACTTTAAGTTGATAGGTTAACTTGTGAATAACTATCATCTCTGCTGTTGAATGTTCTTTTCCAAGAATGTGATATGCCTTTTGTCTTAGTTTCCTAGGGCTGCTATAACAAAGTAGAGGCTAGAAATATAAATACAGGGTGTAAGTAGGGCTCATGTTCCTACTGAAACCCACAGAAGATTCCTTGCATCTTTCAGCTTCTTTTATCCCCAGATATTCCTTGGCTTGTGACAGCATAACTCCAATCTGTGTCTTTAACGTCATATAGTGTTTCCCTGTGTTTCTGTCTCTTCATGTGGCAATCTTTTAAGAACACCAGTCAGATTAGGGGCTTACCCTACTCCAGTGTGACCTCATCTTAACTAATTACATCTGCAGTGACCTTATTTTCAAATAACTTCATGTTCTGAGGTACTGAGCATTAGGACTTAAACATATTTTAAAGGTGGGACACACAATTCAACCCATAATACTGTTTCATGTGTTCAAATCTGTGTGTGCATGTAAAGTTTTATAATTTGTGGAACTTTCTAATTAAATATATTCCCAATTTTTTTGTATTTTTATTATAAATGTAGTCTTTTGTTATCTTTTCTAAATAGCTATTTGTATATATGAAGGTTACTAAAACTGAGTATTAATTTGCTATAGTGAATTTAATGAACTTTCTATAAATTTTCAGGTAACTCTTGATTTTGCAAAGAAAGAGTTTTAATATTGACAAATAATGTGAATTTTTCCTTTCAAAGTTGTTTGTATGTATGTGGGAGGATGACCCATGCTGTGCAACACATGGGTCCCTAGTTCCCCAACCAGGGATCAAACCCATGCCCCCTTCATTGGGAGAGCAGTCTCAACCACTGGACTGCTAGGAAAGTCACCCTTTCCAAGTTTTTATACCTCATTTCTTTCTCTTATTTAATGCTCTACCCTGTACTATAATAATAGTTGTTATAGTACTCATCTTTTTCTTTTTCCTGACTTTAATGTGACTGCTTTGGGATTTTTCCCATTAGGAATGGTACCAAGGTTTAAGTTGTACTGTGATTTTTCTCTAGTTAAATATGTTTCCATTTTATAAAGTTATTTTTATGGAAAAATGCGTGTTGAATTTTTAATATGTTTTTAATATCTTTGGAAATGATTACTTGACTTTTCACTTTTGACCTATTTACTATTACTACTATTTACTTATAGATTTCTCTAATATTGAAACATACTTCTATTCATGGAAAAAACCAACATATGTATGTCTTATATTTAATATGCTTCCGAGTCACTTTCTTTTCCTTCTAGGTCATTTTGAATATAGTTTTTGCACTGATATTCAAAAATGAAGTTGATGTATAGTTTGCTTTTTGGGTGTCATCTTTATCCGGTATTGGTATTATGTTTGTCTCATATACAAAAAAGAATTCTTTTTTCTTTCATAATATGTTGTATAGCACATGCTTAACAGCTGTCCTTTAGATAGTTGTTTAAATTCCCATGTTAATATCTATGGGCCTTGTCTATTTGTTTTGTTTGGGGGGATTTCTTTTCATAAATTTATTTGTGGAAAATGGTCTTTGTTTTCTACATCTTATAGAGTCAGTTTAGGTAATTTATATTTTTCAGAAATTATTTCTATCAAGCCATTTATGAAAGTTTATTTCCATAGAATCTTATAAAATACTTTTATAGTTTTTTAGCTTCCTGTTTTACCTTTTTCTCTATTGATGTTTCTTCATTTGTATATTCTGAATTCTCCCTCTTATTTATCCAATAGTTTTATATTTTTTATTTCAGATCCCATTAAGCAATCAAAGCTGTTTGTATTTCATAAATACCTGCCTCTACTCATATTTCCTTTCCTGGGATTTACTGAAGCTTAGGAAATAGGAGCTATATATAAACCTAGAATTTGCTTAATAGGAAATGAGGCTATAAGCTAAGAATCCCATACATGTATTTTTTTGGTTTTAATTATGTATAATTTTGGAAAATTTTACAAATGACATTTATTTGCAATTTCTTTTAG
Seq C2 exon
GAGAAATATGGGGGATGGATGAGCAGCTGAAAATTCAGGACAGACTTTTGACACAACTTGAAGATAAATTCACAAAAACACTGACTGATGAAAAAGTCAGTGAATGTCATAAGAAATTTGCAAATGCATTTCCTCTGAACTCAGACTTTTTTCCTTCCAGTCACAGTGTCTATGAATATGACTTATTTGGAAAATGTTTAGAACATAATAATTTGAACTATTGTGAGAGAATCTTTATAGGAAGAGAAGACTGTGAATATAAGGAGCCTATGAAATCATTTGGCAATAGCTTATCCCATCTTGTAGTAACCCCCTTTAAGTGTAATCATTGTGGAAAAGGTTTTGATCAAACTTTGGACCTCATCAGACACTTGAGAATTCATACTGGAGAGAAACCCTATGAATGTAAAAAATGTAGAAAAGCTTTTGGTCACAAGGAAAAACTGATTAAACATCATAAAATTCACAGTAGGGAGCAGTCTTATGAATGTAATGAATGTGGGAAAGCTTTCATTAAAATGTCAAATCTCATTAGACATCAACGAATCCATACTGGAGAGAAACCCTATGCATGTAAGGAGTGTGGGAAATCCTTCAGCCAGAAATCAAATCTAATTGATCATGAAAAAATTCATACTGGAGAGAAACCTTACGAATGTCATGAGTGTGGAAAAGCATTCAGCCAGAAGCAAAGCCTCATTGCACATCAGAAAGTTCATACTGGGGAGAAACCTTATGCATGTAATGAATGTGGTAAAGCCTTCCCACGAATAGCATCTCTTGCTCTTCATATGAGAAGTCATACAGGAGAGAAACCTTATAAATGTGATAAATGTGGAAAAGCCTTCTCTCAGTTTTCCATGCTTATTATACATGTGAGAATTCATACAGGTGAGAAACCCTATGAATGTAATGAATGTGGAAAATCTTTCTCTCAAAGTTCAGCCCTAACTGTACATATGAGAAGTCATACTGGTGAGAAACCTTACGAATGTAAGGAATGTAGAAAAGCCTTCAGCCACAAGAAGAACTTCATTACACACCAAAAGATTCATACTAGAGAGAAACCTTATGAATGTAATGAATGTGGGAAAGCTTTCATTCAGATGTCAAATCTTGTTAGACACCAGAGAATTCACACTGGAGAAAAACCCTATATATGTAAGGAATGTGGCAAAGCCTTTAGCCAGAAATCAAATCTCATTGCTCATGAAAAAATTCATTCTGGAGAGAAACCCTATGAATGTAATGAATGTGGGAAAGCCTTCAGCCAAAAGCAAAACTTTATTACACATCAGAAAGTTCACACTGGAGAGAAACCTTATGATTGTAATGAATGTGGTAAAGCCTTCTCTCAAATTGCTTCCCTTACTCTTCATCTGAGAAGTCACACAGGGGAAAAGCCTTATGAATGTGATAAATGTGGGAAAGCCTTCTCTCAGTGCTCACTGCTTAATTTACATATGAGAAGTCATACAGGTGAGAAACCCTATGTATGTAATGAATGTGGAAAAGCTTTCTCTCAAAGAACTTCCCTTATTGTACACATGAGAGGTCATACAGGTGAGAAACCTTATGAATGTAACAAATGTGGAAAAGCCTTCTCCCAAAGTTCCTCCCTTACAATACATATACGAGGTCATACAGGTGAGAAACCCTTCGACTGTAGTAAATGTGGAAAAGCCTTTTCCCAAATCTCATCTCTTACACTTCATATGAGAAAACATACAGGTGAGAAGCCTTATCATTGTAATGAGTGTGGTAAGGCCTTCAGCCAAAAGTCACACCTTGTTAGACACCAGAGAATTCATACTTATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004939:ENSBTAT00000031518:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development