Special

MmuINT0179804 @ mm10

Intron Retention

Gene
ENSMUSG00000059975 | Zfp74
Description
zinc finger protein 74 [Source:MGI Symbol;Acc:MGI:107784]
Coordinates
chr7:29932791-29937695:-
Coord C1 exon
chr7:29937600-29937695
Coord A exon
chr7:29936044-29937599
Coord C2 exon
chr7:29932791-29936043
Length
1556 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TTCTTTGCTGTCTATTTTAGGGG
3' ss Score
12.54
Exon sequences
Seq C1 exon
GCCCGCCACTCACCAAACCTGAAGTGATTTTCAAGTTGGAGCAAGAGGAAGAGCCTTGTGTGGTGGAGAGAGAAGTGCTGTGGAGACCCTGTCCAG
Seq A exon
GTTAGTGTGTGTGTGTGTGTGGGGGGTGGGGGGGACCCAGCCAGGTAAAGCGAGAGGACCAGTAAGTGACTGGCCTGAGATGTTTCCTAAGGTAGATTCCCACAGCGTGTAGTAACAGTTATGTGAAACTAAGATGTTCTCTTTAAAAAAAAAAAAAAAATTCCCTGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGCCTACAAAGTGAGTTCCAGAACAGCCAGGGCTATGCAGAGAAACCCTGTCTCAGAAAAAAAATTTTTTTTAATTACGTTTTTTTGTGTACACACATGTGTGGGTGCATGCGTGTTATGGTGCATATGTGGAGGTCAGAGACAAGTTGTACAATCAAATTTGGGACATCATGCTGGTAGCAAATGTCATTACATGATGATGATCTATTTCATCAGCTCAAGGTGTTATTTTTCAATACTATTAAAGTATGTGTGTGTGTGTCTGTGTGTGTGCAGACATGCATGTGGAGGCCAGAGGACAACCATATTTTGAGGTTCTGGGAGCTAGGACTGTTCTATCTTTTTGGCAGTACACAGTTGACCTTGAACCATCTTTCTTTTCAGCTGTTGTTAGTGTTGCATTGAGACAGGGTCTTACATAGCCCGAGAAAGCCTTGAATTGCTCTGTTGCTAAAACTGGCCTTGAATTTCCAGTCCTTCTGCCTCCACCCCACAAGGGATGAAATTAAGGCACAGTCTGTAATGGTTAGCCATTGTGTGTTCATTTTTGAATGTTTGGATATTTTTGATTATTTTTGCCTTAGGTCTTTTTTCATAGTTTTTAAATTTTTGAATGTAGTTTTCTTTTATTACATTTCCCAAGTAGCTATTTATGTACATGTGAAGGTTATTAAAATTAATATTACTTTCTTTTGCATAAAAAAAGGTAATTGGATTTCTAAATATCTATTTCCTTTCCTGGAACTTCCTTCTAAAACTGAGAAGCTAAGAGACACATGTGGGTCTAGAGGACAGCGCAGCAGTTGGGAGCACAGGCTGCTCCTCTGGAGGACCTGGGTTGGATTTGCAGCCCACGAGGCAGCTCACAGCTGTCTGTGACTACAGTTCATGGGACCCAGTGCCCTCTTCAGGCTTCAGCGAGCATTAGGCATGCATGTAGTGCACTTCAGTGTGTGCAGGCAAGACAAAAACAAAAACAGACAAACAAAAACATATATGAAATGAAAAACGTTTTTAATAATACTTTTTAAGATTTAATTATTTTATATATGTGAGTACACTGTAGCTGTCTTCAGACACACACCAGAAGAGGGTATCAGATCTCATTACAGATGGCTGTGAGTTGCTGGGAATTGAACTCCGGACCTCTGGAAGAACAGCCAGTGCTCTTAACCCCTGAACCATCTCTCCAGCCCAAGTGAAAATATTTTTAAGATTACACTAAAATAGAGATATGCACTTGCAATTTGTTTACCTGTGGGAACATTGTTTTTCAAGTATACTTGGTATTTCAGTGTCAGAACCGGAACCACGAGGGATACTTCTTTGCTGTCTATTTTAG
Seq C2 exon
GGGAGATTTTGGGAATTGACGAGCACCAGAAAATCCAGGACGGACAAGTTTTCGAGGGAATAGTGGTGACGAGTGAAGCCAGCGAATGTCCGGAGGAATTTGCAAGTACGTTTTTCCCAAACGCAGACTCCATTCCTTCCATGCACAGTCTCTTTGAATGTGACGGTGTTGGAGAGTGTTTAGAGCCCAATTTTGGTGATGATGATGTACAATACCCGTTGCCAGAGGAACAGTTTGAATATGACGATGCTATGCAGCCATTTCACACCAGCTCGCCCCATTTTGTGCTGACCCCCTTTAAGTGCAACCATTGTGGAAAAGGCTTTAGTCAGACCCTGGACCTCATCAGACACCTGAGAGTTCACACAGGGGGGAAGCTCTATGAATGCCACCAGTGTGGGAAAGGCTTTAGCCACAAGGAGAAGCTGATCAACCATCATAAGCTCCATAGCAGGGAGCAGTGTTACGAGTGTAGCGAGTGCGGGAAGACTTTCATCAAGATGTCAAATCTCATTAGACATCAAAGGATCCACACTGGGGAGAAGCCGTATGTGTGCCAGGAATGTGGGAAATCCTTCGGCCAGAAGTCCAATCTCATTGATCACGAAAAAATTCACACTGGAGAGAAGCCTTACAAATGTAACGAATGTGGAAAATCCTTCAGCCAGAAACAAAGCCTTGTCGCACATCAGAAAGTTCACACTGGGGAGAAGCCTTACGCGTGCAACGAGTGTGGGAAAGCCTTCCCTCGCGTGGCTTCCCTTGCTCTGCATATGAGGGGCCACACAGGGGAGAAGCCATACAAGTGTGATAAGTGTGGGAAAGCCTTCTCTCAGTTTTCCATGCTCATCATACACGTGAGGGTCCACACCGGGGAGAAGCCTTATGAGTGTGGTGAGTGTGGCAAGGCCTTCTCTCAGAGCTCGGCACTGACAGTACACATTAGAAGCCACACGGGCGAGAAACCCTACGAATGTAAGGAATGCAGAAAATCCTTCAGTCATAAGAAAAACTTCATCACCCACCAGAAAATCCATACTCGAGAGAAACCTTACGGATGCAATGAGTGTGGGAAAGCTTTTATCCAGATGTCAAACCTTGTCAGGCACCAGAGGATCCACACGGGAGAAAAACCTTATCTATGTAAGGAGTGTGGCAAAGCCTTCAGCCAGAAGTCAAATCTCATTGCTCATGAAAAAATTCACTCTGGAGAGAAACCCTACGAGTGTAATGAGTGTGGGAAAGCCTTCAGCCAGAAGCAAAACTTCATCACCCATCAGAAAGTTCATACGGGAGAGAAACCTTACGATTGTAATAAATGTGGGAAAGCCTTTTCCCAGATCGCTTCCCTCACGCTTCATCTGCGAAGTCACACGGGAGAAAAGCCTTACGAGTGTGAGAAGTGTGGGAAGGCCTTCTCCCAGTGCTCACTACTCAACTTACACATGAGAAGCCACACAGGGGAGAAGCCGTACGTGTGTAACGAGTGCGGAAAAGCCTTCTCTCAAAGAACGTCCCTCATCGTGCATATGAGAGGCCATACCGGCGAGAAGCCCTATGAATGTAACAAGTGTGGGAAAGCTTTCTCCCAGAGTTCCTCCCTCACTATCCACATCCGGGGTCACACGGGCGAGAAGCCCTTCGACTGCAGCAACTGTGGGAAAGCCTTCTCTCAGATCTCTTCTCTTACGCTTCACATGAGGAAACACACAGGCGAGAAGCCCTATGTCTGTATTGAGTGTGGAAAAGCTTTCAGCCAAAAGTCACACCTTGTCAGACACCAGAGAATCCACACTCACTAGAGACGCCGTGACCACGGTGAATGTGAGGACTGCCTCCCATTGAAGTGAACACCTCATAGCACGCGACACAATCAGTTCTGGCGCTGACTGTAGGAGAGCCTTGGGAAGGTCCCATGCATCTGTTAGACAATTCCCACTTCGGGGACCAATTGTATGAGAAACTGTCACCAAACACCCAGTGATATCAGTATTCTCTTTCAAGTCTGAAAGAAAATATCTACTGTCAATCAACGAACTCGAGCTCCTTGCTGATGTATTAAGCAAGAGAAGGAGATTGGAAAAACCAAAAACAATAACTTTTATAGGCAATATGAGACTATGGGGAAGTAGGTTTTGAATGATAATGTATGTGTCGGGAAGAAAGTCTAAGGTAATTAGGTGACATGCGTACGAAGTTACAAAACGTGCTGACGAATGCAAAAGACCACTTGATAAAGCAAGTTAGAAAGTTATAAAAGTTCACGAACCCTTCCCAGTCTCTCCCTTGTCCATACTTCCACTCAAAATTTACACATCAGTTATAAAGGATTTCATGAACTGATTTCAGAGTAATACGGCAAGGGAAAGGACCACAAATAGCAAAAACAAAAAATACAGCAAAAAACAAAACAACAACAAAAAACAGTTTTTAACAAAACAACTAGGGAAGATGTTCACTCTCTACTAGATTATAATTATTTAAAGTTTTTCTTATTTAAACTCTTTTGAGTGAATAAACTTTTGGAAACAAATTGAAACCCAAGACTTGGCAATTTTCTATCTGCCTGGTGCTACTGAAATCATTGGAATAAGTCTAGCCTGTTCAATATGTGTACAGGTTATGTGACCAAACTTGTTACTTCTTAAACAAAGATATACAGATTCCCTCAGGCTGGTGAGACGGCCCCACTGATAGGGGTTTGCTGCCAAGCTTCACAGCTGACTACGATACCCAGAATCCACATGGTGGGTGGAAAGAACCAACTTCTACACTTGTCCTCTGACCTCCAATGGCACGCCATGGTATGCATGTACACACACACACACACACACACACACACACACACACACTCAAAATAGGAAAGGTAAAATTCTAAAATGCTGGAAATAAAGTGAAACATGTTGCTTTAGCGTAAGAATATTAAAAAAAATAATAAACCCTGCAAACATGGAATAGTCTATTTTCTTTTAGTGTACTGGACTCAGAAGTATCCATGTATGTCTGCAAAGATCTATCTATAAATGTTCCCAGATTTGTGGCTTGGTTTGCTCTAAGTGATATGTAACATTATCATTAATGCAGAGGTGGATCAATATGTTTATTTCTATGATAGGACACTATTCTTTATTTAAAAGATACAAAATTCACATGTAGTTACATGGCTGGATCATGATATTTTGAGAGGAAACCCCAAAATATTCAATTAACCATGGTATAATATTTGTAAGTTAATAAAACAGTTCAAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059975:ENSMUST00000108205:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.030 A=NA C2=0.026
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000032797





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000103840, ENSMUSP00000103846, ENSMUSP00000103847
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr19:37414420-37425867 
HsaINT0187693
(ZNF569)
Human
(hg19)
chr19:37905322-37916769 
ALTERNATIVE
HsaINT0187693
(ZNF569)
Rat
(rn6)
chr1:87819707-87820603 
Cow
(bosTau6)
chr18:47621196-47629548 
ALTERNATIVE
BtaINT0165737
(ZNF569)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chrUn_random:28965509-28965614 
LOW PSI
GgaINT0003356
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GAAGAGCCTTGTGTGGTGGAG

				
R: 
AAGGGGGTCAGCACAAAATGG

				
Band lengths: 
347-1903

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"