HsaINT0187119 @ hg38
Intron Retention
Gene
ENSG00000186812 | ZNF397
Description
zinc finger protein 397 [Source:HGNC Symbol;Acc:HGNC:18818]
Coordinates
chr18:35242391-35243293:+
Coord C1 exon
chr18:35242391-35242884
Coord A exon
chr18:35242885-35243151
Coord C2 exon
chr18:35243152-35243293
Length
267 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CCATATTTTACTGATTTCAGGTC
3' ss Score
6.87
Exon sequences
Seq C1 exon
GAAAGAAGAGATTACTCACACTCCTTCGCAAGCACAGAACCAGTTGTACTGAGCTTTTTGCTAAGCTGTTTCAGCCAAGAATGGCTGTGGAATCTGGAGTGATTTCAACCCTGATACCTCAGGATCCTCCGGAACAAGAACTAATACTAGTGAAAGTAGAAGATAACTTTTCCTGGGATGAGAAATTTAAGCAGAATGGGAGTACTCAATCCTGCCAAGAATTGTTTCGTCAGCAATTCAGAAAATTTTGCTACCAGGAGACACCTGGGCCCCGGGAGGCTCTGAGCCGACTCCAGGAACTTTGCTATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCTTAGAACTGCTGGTACTGGAGCAGTTCCTGAGCATTCTGCCTGAGGAGCTGCAGATCTGGGTTCAGCAACATAATCCAGAAAGCGGCGAGGAAGCTGTGACCCTGTTGGAGGATTTAGAGAGGGAGTTTGATGACCCAGGGCAGCAG
Seq A exon
GTGGGAACGGAGAAAAGTGATGTGGGAAAAGGAATTTACAGCCTGGAGCATGTAATGGTATCATAACAGTAGGATAAAAATTTTTATGTCTCTACTGAACCCTAACCTGAAGTGACTAATAGAGCCATACTTGTCTATACCCTTGAATGGTCTTTTTCCCCTGTCCTTCATCCCTGGAGATGTCATCATTGACCTCTTTGAGATTTTTACTAAGCAAGTTTTCTTAGGGATTTTCTCACAAAGCTAACCATATTTTACTGATTTCAG
Seq C2 exon
GTCCCAGCTAGTCCACAGGGACCAGCAGTGCCATGGAAGGATTTAACATGTCTCAGAGCATCCCAAGAGTCAACAGACATCCACCTCCAGCCCTTAAAGACACAGCTGAAATCCTGGAAACCATGCCTTTCCCCTAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186812:ENST00000330501:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.168
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=68.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGACTCCAGGAACTTTG
R:
GCTGGAGGTGGATGTCTGTTG
Band lengths:
302-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains