HsaEX0073588 @ hg38
Exon Skipping
Gene
ENSG00000186812 | ZNF397
Description
zinc finger protein 397 [Source:HGNC Symbol;Acc:HGNC:18818]
Coordinates
chr18:35241030-35244100:+
Coord C1 exon
chr18:35241030-35241109
Coord A exon
chr18:35242391-35242884
Coord C2 exon
chr18:35243152-35244100
Length
494 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTTTATATCCTTCAGGAA
3' ss Score
10.27
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
CTGCGTACGCGCACTTCCGGTCTTTGTGGCTTGCAGCTCGGGGTGGGTGGCTCATTTCCTGGCCGCTCCTGGGCTTCGCG
Seq A exon
GAAAGAAGAGATTACTCACACTCCTTCGCAAGCACAGAACCAGTTGTACTGAGCTTTTTGCTAAGCTGTTTCAGCCAAGAATGGCTGTGGAATCTGGAGTGATTTCAACCCTGATACCTCAGGATCCTCCGGAACAAGAACTAATACTAGTGAAAGTAGAAGATAACTTTTCCTGGGATGAGAAATTTAAGCAGAATGGGAGTACTCAATCCTGCCAAGAATTGTTTCGTCAGCAATTCAGAAAATTTTGCTACCAGGAGACACCTGGGCCCCGGGAGGCTCTGAGCCGACTCCAGGAACTTTGCTATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCTTAGAACTGCTGGTACTGGAGCAGTTCCTGAGCATTCTGCCTGAGGAGCTGCAGATCTGGGTTCAGCAACATAATCCAGAAAGCGGCGAGGAAGCTGTGACCCTGTTGGAGGATTTAGAGAGGGAGTTTGATGACCCAGGGCAGCAG
Seq C2 exon
GTCCCAGCTAGTCCACAGGGACCAGCAGTGCCATGGAAGGATTTAACATGTCTCAGAGCATCCCAAGAGTCAACAGACATCCACCTCCAGCCCTTAAAGACACAGCTGAAATCCTGGAAACCATGCCTTTCCCCTAAAAGTGGTGAGGAATGGGAAATCATCTGGAAACTCTTGACACTTAGGCCTCTGTTTTTGAGAATGCAGAATTAATTGCACTTGACAAACTTGCCACATGTGAGCATCACCTTTATTATTCTAAACCAGAGGTGCTCGCTTTAGCGGCTTTGTATTCACCCCTCATGAATTGCTGTCAGCCCTCCTGTGTGAGTTTCCCTGTTATTCATTCATTCATTTCATTATGTTGTAACTTTATAAAGCGTCAATACATGTCTGGTACTGTGGTAGGCCCCAGGAGAGGTTTCAGGTCTAGGTGGGTGATGGACAAATAAAAAGGCAGTTGCAATGTAGTAAATTATAGAATATAAGTAGGCAGTGGGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186812-'1-4,'1-1,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.128 C2=0.135
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=68.1)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCGGTCTTTGTGGCTTG
R:
AGCGAGCACCTCTGGTTTAGA
Band lengths:
343-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development