BtaEX6091576 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010252 | ZNF397
Description
Bos taurus zinc finger protein 397 (ZNF397), mRNA. [Source:RefSeq mRNA;Acc:NM_001075262]
Coordinates
chr24:22098467-22100704:-
Coord C1 exon
chr24:22100654-22100704
Coord A exon
chr24:22098877-22099371
Coord C2 exon
chr24:22098467-22098608
Length
495 bp
Sequences
Splice sites
3' ss Seq
AGTGATTTTATATCCTTCAGGAA
3' ss Score
7.51
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
CTCTCTGCTGCAGGTCCGCGGCTCGCGCCCTGGCCGCTCCTGGGCTTCGCG
Seq A exon
GAAAGAAGAGATTACCCAAAGAAACTCTGAAGTACAGGACCCAGTTTTAGTGAGCTTCACGCTAAGCTGTTTCAGCCCAGAATGGCTGTGGAATCCAGAGCAGTTTCAACCCCAGTACCTCAGAATTCTCAGGAACAAGAGCTGATACTGGTGAAAGTAGAAGAAAGCCGTTCTTGGGGTCAGAAACTTAAGCAGAGTGGGAGTGCCCGATCCTGCCAAGAATTGTTTCGCCAGCAGTTCAGAAAGTTCTGCTACCAGGAGACACCGGGGCCCCGGGAAGCGCTGGGCCGACTCCAGGAGCTTTGCTATCAGTGGCTCAGGCCTGAGTTGCACACGAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGAGTATCCTGCCAGAGGAGCTGCAGATCTGGGTTCAGCAGCATAGTCCAAAGAATGGCGAGGAAGCTGTGACTCTGTTGGAGGATCTGGAGAGGGAATTTGATGATCCCGGGCAGCAG
Seq C2 exon
GTCCCAGCTACTCCACAGGGACCACCAATGCCTTGGAAGGATTTGACCTGTCTTGGAGCAGCCCAGGAGTTTACACATATTCAACGCCAGCCTTTAAAGAAACAGCTGAAACCCTGGGAACCTTGCCTTCCCCCCAAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010252-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.174 C2=0.542
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=68.1)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGCTGCAGGTCCG
R:
GGAAGGCAAGGTTCCCAGG
Band lengths:
182-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]