RnoEX0101354 @ rn6
Exon Skipping
Gene
ENSRNOG00000048101 | Zfp397
Description
zinc finger protein 397 [Source:RGD Symbol;Acc:6504280]
Coordinates
chr18:15856801-15859253:+
Coord C1 exon
chr18:15856801-15856996
Coord A exon
chr18:15858411-15858907
Coord C2 exon
chr18:15859112-15859253
Length
497 bp
Sequences
Splice sites
3' ss Seq
AATGCTTTCATGTATTGTAGGAA
3' ss Score
9.66
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GACGTGCCTCAGGTCTTTGTGGCTAATGTCCGCCCCCTGTGCTGCTCTTGCGCTGTACCTGGGGCTCCGGTCGGCGGGAAGGCGTGTGGCAGGTCCTGAAGAGACCCCTCGACCGCCGCTTTCCGCTGGACAACCCCCGTGGTGCCCCTTCTGGCACGCGCCTACTCTGTGCTTTAACCCGGAAGCTAAAAATAAG
Seq A exon
GAAAGAAGAGGTTACTTGGGAAACTCCTCCCCAAGCACAAAACCCAACTGTACTAAGCTTTTTGTGAGCTATTTCAGCCCAGAATGGCTATGGAATCCAGAGCAATTTCAACTTTAAAACCTCAGGATCATCAAGAAGAATTAATACTCGTGAAAATAGAAGACAGCAGCTTTTCTTGGAGCCAGAAATGTAAACAGAATGGGAGTGCCCAGTCTTGCCAAGAACTGTTTCGCCAGCAATTCAGGAAGTTTTGCTATCATGAAACACCTGGGCCCCGAGAGGCTCTGGGAAGACTCCAGGAACTCTGCCATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCCTGGAACTGCTAGTGCTGGAGCAGTTCCTGAGCATCCTCCCTGAAGAGCTGAAGATATGGGTTCAACAGCACGGCCCAAAGAGCGGTGAGGAAGTTGTGACTCTGCTGGAAGATTTGGAGAAAGAGTTTGATGATCCAGGGCAGCAG
Seq C2 exon
GTCCCAGATAATCCACAAGGACCATCAGTGTCATGGAAAGATTTGACATATCTCAGAACATCCCAAGATTCAACAAGCATCCAAGTCCGGCCTCTGAAGACACAGCTGAAATCCTGGAAACCTTGTCTTTCCTCTAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048101-'1-1,'1-0,6-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.109 C2=0.354
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=68.1)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGCCTCAGGTCTTTGTG
R:
CATTTTTAGAGGAAAGACAAGGTTTC
Band lengths:
338-835
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]