BtaEX0041638 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031873 | ZSCAN16
Description
Bos taurus zinc finger and SCAN domain containing 16 (ZSCAN16), mRNA. [Source:RefSeq mRNA;Acc:NM_001034411]
Coordinates
chr23:30309506-30312399:-
Coord C1 exon
chr23:30312349-30312399
Coord A exon
chr23:30311124-30311593
Coord C2 exon
chr23:30309506-30309644
Length
470 bp
Sequences
Splice sites
3' ss Seq
TCATTTCTCTATGGCAATAGGTT
3' ss Score
6.06
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
AGTCCTTGTTCGTGCCGCCCCAAAGAACGCTAGCTGTTCTCCAAGCGTGAG
Seq A exon
GTTTTTCTCTGAGACAAGATTCTGAGAGATTCCCCTTGACTCAGTCCCAGATAGAGGATTAATCTCCTGAAAAACAGCCCAGAATGACCACATTTCTGGAACTTGAAGAACAAAAAAGACTTCTAATAGTTAAAGCAGAAGACCATTACAGGGGACAGGACTCCATCTCACAAAAGTCCAGTCCTCACAGAAGGGAACTCTTCAGGCAACACTTCAGGAAGCTCTGCTATCGGGATGCACCTGGACCCCGTGAAGCTCTTATCCAGCTCTGGGACCTTTGCCGCCAGTGGCTGAGGCCAGAATGCCACACAAAAGAGCAGATTTTAGACCTGCTGGTGCTTGAACAATTCCTGAGCATTCTCCCCAGGGACCTGCAAGCATGGGTGCAGGCACACCATCCAGAGACTGGAGAGGAGGCGGTGATTGTGCTGGAGGATCTGGAGAGAGAGCTTGATGAACCTCGAAAGCAG
Seq C2 exon
GTTCCAGGCAATTCAGAAAGACAGGACACACTTTTGGACAAGTTGGCCCCCTTGAGAAGGCCACATGAGTCATTGACTATCCAGCTTCATCCCAAGAAGACCTGTCAGGAGCAGAAATCTGGGGAGGCCCAAAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031873_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.147 C2=0.851
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=72.9)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTTGTTCGTGCCGC
R:
CATTCCTTTGGGCCTCCC
Band lengths:
190-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development