HsaEX6046040 @ hg19
Exon Skipping
Gene
ENSG00000196812 | ZNF435
Description
zinc finger and SCAN domain containing 16 [Source:HGNC Symbol;Acc:20813]
Coordinates
chr6:28092338-28094699:+
Coord C1 exon
chr6:28092338-28092455
Coord A exon
chr6:28093191-28093608
Coord C2 exon
chr6:28094561-28094699
Length
418 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGACTCAATCCCAGATA
3' ss Score
6.06
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
CGGCCCGGAAGTGCCCGGCTGAAGCGGCCGGGCGCCGATTGGTGTCTTTGAGTCTAGTCTTTGTTCGGGGCTGTCCAAAGGACGCTAGCTGTTGCACCTGTTCCTCCCTGCGCGTAAG
Seq A exon
ATAGAGGATAAATCTCCTGGCAAAGCCCAGAATGACCACAGCCCTGGAACCTGAGGACCAAAAAGGACTTCTGATAATTAAGGCAGAGGACCATTACTGGGGACAGGATTCCAGCTCACAAAAGTGCAGTCCTCACAGGAGGGAACTCTATAGACAACACTTCAGGAAGCTCTGCTATCAGGATGCACCTGGACCCCGTGAAGCTCTTACCCAGCTGTGGGAGCTCTGCCGTCAGTGGCTGAGGCCAGAATGCCACACCAAGGAGCAGATTTTAGACCTGCTGGTGCTAGAACAGTTCCTGAGCATTCTTCCTAAAGACCTGCAAGCATGGGTGCGTGCACACCATCCAGAGACTGGAGAGGAGGCAGTGACGGTACTGGAGGATCTGGAGAGAGAGCTTGATGAACCTGGAAAGCAG
Seq C2 exon
GTCCCAGGCAATTCAGAAAGACGGGACATACTCATGGACAAGTTGGCCCCCTTGGGAAGGCCATATGAATCACTGACTGTCCAGCTCCATCCCAAAAAGACCCAGCTGGAGCAGGAAGCTGGGAAACCACAAAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196812-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.217 C2=0.787
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=72.9)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGCCCGGCTGAAG
R:
TCCTTTGTGGTTTCCCAGCTT
Band lengths:
248-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)