Special

HsaEX6046040 @ hg38

Exon Skipping

Gene
ENSG00000196812 | ZSCAN16
Description
zinc finger and SCAN domain containing 16 [Source:HGNC Symbol;Acc:HGNC:20813]
Coordinates
chr6:28124560-28126921:+
Coord C1 exon
chr6:28124560-28124677
Coord A exon
chr6:28125413-28125830
Coord C2 exon
chr6:28126783-28126921
Length
418 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGACTCAATCCCAGATA
3' ss Score
6.06
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
CGGCCCGGAAGTGCCCGGCTGAAGCGGCCGGGCGCCGATTGGTGTCTTTGAGTCTAGTCTTTGTTCGGGGCTGTCCAAAGGACGCTAGCTGTTGCACCTGTTCCTCCCTGCGCGTAAG
Seq A exon
ATAGAGGATAAATCTCCTGGCAAAGCCCAGAATGACCACAGCCCTGGAACCTGAGGACCAAAAAGGACTTCTGATAATTAAGGCAGAGGACCATTACTGGGGACAGGATTCCAGCTCACAAAAGTGCAGTCCTCACAGGAGGGAACTCTATAGACAACACTTCAGGAAGCTCTGCTATCAGGATGCACCTGGACCCCGTGAAGCTCTTACCCAGCTGTGGGAGCTCTGCCGTCAGTGGCTGAGGCCAGAATGCCACACCAAGGAGCAGATTTTAGACCTGCTGGTGCTAGAACAGTTCCTGAGCATTCTTCCTAAAGACCTGCAAGCATGGGTGCGTGCACACCATCCAGAGACTGGAGAGGAGGCAGTGACGGTACTGGAGGATCTGGAGAGAGAGCTTGATGAACCTGGAAAGCAG
Seq C2 exon
GTCCCAGGCAATTCAGAAAGACGGGACATACTCATGGACAAGTTGGCCCCCTTGGGAAGGCCATATGAATCACTGACTGTCCAGCTCCATCCCAAAAAGACCCAGCTGGAGCAGGAAGCTGGGAAACCACAAAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196812-'0-7,'0-5,3-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.222 C2=0.809
Domain overlap (PFAM):

C1:
NA
A:
PF0202312=SCAN=PU(97.9=72.9)
C2:
PF0202312=SCAN=PD(0.1=0.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGCCCGGCTGAAG
R:
TCCTTTGTGGTTTCCCAGCTT
Band lengths:
248-666
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains