Special

MmuEX0053289 @ mm9

Exon Skipping

Gene
ENSMUSG00000024276 | Zfp397
Description
zinc finger protein 397 [Source:MGI Symbol;Acc:MGI:1916506]
Coordinates
chr18:24113424-24115697:+
Coord C1 exon
chr18:24113424-24113524
Coord A exon
chr18:24114840-24115354
Coord C2 exon
chr18:24115556-24115697
Length
515 bp
Sequences
Splice sites
3' ss Seq
AATGCTTTCATGTATTGTAGGAA
3' ss Score
9.66
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GGAGCTGTGGTGTCGCCGCTCGGGGTCCTTCCCCATGGGACTGAGGGAGAGGGAGAGAGCGGACCCGGCGACTGAGAAGCGCAGAGGTGGTCAGCGTCTGG
Seq A exon
GAAAGAAGAGGTTACACCTGGGCCCCGAGAGGCTCTGGAAACTCCTCCCCAAGCACAAAACCCAACTGTACTAAGCTTTTTGTGAGCTATTTCAGCCCAGAATGGCTGTGGAATCCAGAGCAATTTCAACTTTAAAACCTCAGGACCATCAAGAAGAATTAATACTAGTGAAAATAGAAGATAGTAGCTTTTCTTGGAGTCAGAAATGTAAACAGAATGGGAGTGCCCAATCTTGCCAAGAATTATTTCGCCAGCAATTCAGGAAGTTTTGCTATCATGAAACACCTGGGCCCCGAGAGGCTCTGGGGCGACTCCAGGAACTTTGCCATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCCTAGAACTGTTAGTGCTGGAGCAGTTCCTGAGCATCCTACCTGAAGAGCTGAAGATATGGGTTCAACAACATGGTCCAAAAAGTGGTGAGGAAGCTGTGACTCTACTGGAGGATTTGGAGAAAGAGTTTGATGATCCGGGGCAGCAG
Seq C2 exon
GTCCCAGATAATCTACAAGGACCGTCAGTGTCATGGAAAGATTTGACATATCTCAAAACATCCCAAGATTCAACCAGCATCCAAGTCCGGCCTTTGAAGACACAGCTGAAATCCTGGAATCCTTGCCTTTCCTCTAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024276-'4-1,'4-0,7-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=0.130 C2=0.177
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
PF0202312=SCAN=PU(97.9=68.1)

							
C2:
PF0202312=SCAN=PD(0.1=0.0)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000057253





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000057253f1517A
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr18:35242391-35242884 
ALTERNATIVE
HsaEX0073588
(ZNF397)
Human
(hg19)
chr18:32822360-32822848 
ALTERNATIVE
HsaEX0073588
(ZNF397)
Rat
(rn6)
chr18:15858411-15858907 
HIGH PSI
RnoEX0101354
(Zfp397)
Cow
(bosTau6)
chr24:22098877-22099371 
HIGH PSI
BtaEX6091576
(ZNF397)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCCCCATGGGACTGAGGGAG

				
R: 
CACTTTTAGAGGAAAGGCAAGGA

				
Band lengths: 
214-729

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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