MmuEX0053289 @ mm10
Exon Skipping
Gene
ENSMUSG00000024276 | Zfp397
Description
zinc finger protein 397 [Source:MGI Symbol;Acc:MGI:1916506]
Coordinates
chr18:23954923-23957196:+
Coord C1 exon
chr18:23954923-23955023
Coord A exon
chr18:23956339-23956853
Coord C2 exon
chr18:23957055-23957196
Length
515 bp
Sequences
Splice sites
3' ss Seq
AATGCTTTCATGTATTGTAGGAA
3' ss Score
9.66
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GGAGCTGTGGTGTCGCCGCTCGGGGTCCTTCCCCATGGGACTGAGGGAGAGGGAGAGAGCGGACCCGGCGACTGAGAAGCGCAGAGGTGGTCAGCGTCTGG
Seq A exon
GAAAGAAGAGGTTACACCTGGGCCCCGAGAGGCTCTGGAAACTCCTCCCCAAGCACAAAACCCAACTGTACTAAGCTTTTTGTGAGCTATTTCAGCCCAGAATGGCTGTGGAATCCAGAGCAATTTCAACTTTAAAACCTCAGGACCATCAAGAAGAATTAATACTAGTGAAAATAGAAGATAGTAGCTTTTCTTGGAGTCAGAAATGTAAACAGAATGGGAGTGCCCAATCTTGCCAAGAATTATTTCGCCAGCAATTCAGGAAGTTTTGCTATCATGAAACACCTGGGCCCCGAGAGGCTCTGGGGCGACTCCAGGAACTTTGCCATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCCTAGAACTGTTAGTGCTGGAGCAGTTCCTGAGCATCCTACCTGAAGAGCTGAAGATATGGGTTCAACAACATGGTCCAAAAAGTGGTGAGGAAGCTGTGACTCTACTGGAGGATTTGGAGAAAGAGTTTGATGATCCGGGGCAGCAG
Seq C2 exon
GTCCCAGATAATCTACAAGGACCGTCAGTGTCATGGAAAGATTTGACATATCTCAAAACATCCCAAGATTCAACCAGCATCCAAGTCCGGCCTTTGAAGACACAGCTGAAATCCTGGAATCCTTGCCTTTCCTCTAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024276-'6-1,'6-0,11-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.130 C2=0.177
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=68.1)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATGGGACTGAGGGAG
R:
CACTTTTAGAGGAAAGGCAAGGA
Band lengths:
214-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types