HsaEX0073588 @ hg19
Exon Skipping
Gene
ENSG00000186812 | ZNF397
Description
zinc finger protein 397 [Source:HGNC Symbol;Acc:18818]
Coordinates
chr18:32820998-32823257:+
Coord C1 exon
chr18:32820998-32821073
Coord A exon
chr18:32822355-32822848
Coord C2 exon
chr18:32823116-32823257
Length
494 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTTTATATCCTTCAGGAA
3' ss Score
10.27
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GTACGCGCACTTCCGGTCTTTGTGGCTTGCAGCTCGGGGTGGGTGGCTCATTTCCTGGCCGCTCCTGGGCTTCGCG
Seq A exon
GAAAGAAGAGATTACTCACACTCCTTCGCAAGCACAGAACCAGTTGTACTGAGCTTTTTGCTAAGCTGTTTCAGCCAAGAATGGCTGTGGAATCTGGAGTGATTTCAACCCTGATACCTCAGGATCCTCCGGAACAAGAACTAATACTAGTGAAAGTAGAAGATAACTTTTCCTGGGATGAGAAATTTAAGCAGAATGGGAGTACTCAATCCTGCCAAGAATTGTTTCGTCAGCAATTCAGAAAATTTTGCTACCAGGAGACACCTGGGCCCCGGGAGGCTCTGAGCCGACTCCAGGAACTTTGCTATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCTTAGAACTGCTGGTACTGGAGCAGTTCCTGAGCATTCTGCCTGAGGAGCTGCAGATCTGGGTTCAGCAACATAATCCAGAAAGCGGCGAGGAAGCTGTGACCCTGTTGGAGGATTTAGAGAGGGAGTTTGATGACCCAGGGCAGCAG
Seq C2 exon
GTCCCAGCTAGTCCACAGGGACCAGCAGTGCCATGGAAGGATTTAACATGTCTCAGAGCATCCCAAGAGTCAACAGACATCCACCTCCAGCCCTTAAAGACACAGCTGAAATCCTGGAAACCATGCCTTTCCCCTAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186812_MULTIEX2-2/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.132 C2=0.186
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=68.1)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCACTTCCGGTCTTTGT
R:
CACTTTTAGGGGAAAGGCATGGT
Band lengths:
214-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)