HsaINT0187118 @ hg38
Intron Retention
Gene
ENSG00000186812 | ZNF397
Description
zinc finger protein 397 [Source:HGNC Symbol;Acc:HGNC:18818]
Coordinates
chr18:35241037-35242884:+
Coord C1 exon
chr18:35241037-35241109
Coord A exon
chr18:35241110-35242390
Coord C2 exon
chr18:35242391-35242884
Length
1281 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
ACTGCTTTTATATCCTTCAGGAA
3' ss Score
10.27
Exon sequences
Seq C1 exon
CGCGCACTTCCGGTCTTTGTGGCTTGCAGCTCGGGGTGGGTGGCTCATTTCCTGGCCGCTCCTGGGCTTCGCG
Seq A exon
GTGAGGGACGTGGGCCCCTAGGAAGAGGGAGGTGGGGTTGGGAGCGCGCGCCGGACAGTGGAGGAGCTCCGCTCCTCGGCCTGCCCATCCCCAGGTCGCGGCCCTTTGGCCCGCGCGGCGTCTCCAAGCGACTGGGGAACTCAGAGGAGGCCAGCACTCAAACTCCTGCTTTCCAAAGGAAAACGCAGTTCCGCTGACCCCGTGACTTCGTAAATGCTGCGGTTTAACCAAGGATATAAAAATAGAAGGGCTAGTTAGTTAGTTAGTTAGTGCGGCCGGACTGGTTAAACCTTAAATTTGTAGGCTAAATATTTTAATTCATCTCTTAACGTTAACCGTAGTGTGAGGAATGAATTTTACTCATCTGTCCTGACAAACTAAGGGCATACATTCCTATCGATATCTCGCCATCCTAAAAGCAGGTCAAGTTTGGTCTGTGTCACAACATTTAATACCTATTTGTTACCATATTTTGCTTTTGAACATTTTTAGTCTTGGGATATTCTAAGCTTTTTCAGAACTGATACGGATCTCTTTGCTGCTTTTGTGTATGTGATACCTATCATGTTTTTGAACACATGGTAAGCATTTTACAGATACGTCTTGGTTCTTGGTCAATTCCTCTGTAGACTCGTTTATTCATAAGCAAAAATCTTAATGCTCAGTAAGTGCCTCAGTGTTTGTTGAAGTAATTCGGTAAACACCAAATGCGATCAAATGACAAATATCCAATATTTACATCAACTCATGTTTAATGTGAACTTTTAAAAAAACGTTATTACTGCCTTAAATGAAAATCAACATTACTTGCTTTAGATAGAAAGTAAGTAAAAATAAATGTTTAAAATCAGTATTACTAAATTCTGCCTAAATATTTTTACTCTTGGAAGTCTGATTCTGAAGCCTGTATTTTATTTAAAAGAGAGTTCTACAAGTTTTATTAATACATACATGTTAAAGATAGACTTTTCTCCTTGATACAATCAGAATTGAAAGAATTGGAAAGGAAATTTTCTCACTATGTGATTGATGTTAATGTTGCATTCACATTCTTAGGCTTCTAAAATAGTTTTTTCTAACATTAGTGGTAGGAATTCTTCATAATGGGAGACACTAATTGAGGTTAATGATTTTTAGTTTATCATCACATTATTGTTTTATTTAGTGATAGCCCCAAATCTACTCCCTTTCAATATATTACTAAAGTTACTCATCTTTCTTATTACAAGTACTTAGAGATTTTATTGATTGCTGTAAGTTAACTGCTTTTATATCCTTCAG
Seq C2 exon
GAAAGAAGAGATTACTCACACTCCTTCGCAAGCACAGAACCAGTTGTACTGAGCTTTTTGCTAAGCTGTTTCAGCCAAGAATGGCTGTGGAATCTGGAGTGATTTCAACCCTGATACCTCAGGATCCTCCGGAACAAGAACTAATACTAGTGAAAGTAGAAGATAACTTTTCCTGGGATGAGAAATTTAAGCAGAATGGGAGTACTCAATCCTGCCAAGAATTGTTTCGTCAGCAATTCAGAAAATTTTGCTACCAGGAGACACCTGGGCCCCGGGAGGCTCTGAGCCGACTCCAGGAACTTTGCTATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCTTAGAACTGCTGGTACTGGAGCAGTTCCTGAGCATTCTGCCTGAGGAGCTGCAGATCTGGGTTCAGCAACATAATCCAGAAAGCGGCGAGGAAGCTGTGACCCTGTTGGAGGATTTAGAGAGGGAGTTTGATGACCCAGGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186812:ENST00000330501:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.128
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=68.1)
C2:
PF0202312=SCAN=PU(97.9=68.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTGGCTCATTTCCTGG
R:
CAAAGTTCCTGGAGTCGGCTC
Band lengths:
342-1623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains