HsaINT0187118 @ hg19
Intron Retention
Gene
ENSG00000186812 | ZNF397
Description
zinc finger protein 397 [Source:HGNC Symbol;Acc:18818]
Coordinates
chr18:32820994-32822848:+
Coord C1 exon
chr18:32820994-32821073
Coord A exon
chr18:32821074-32822354
Coord C2 exon
chr18:32822355-32822848
Length
1281 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
ACTGCTTTTATATCCTTCAGGAA
3' ss Score
10.27
Exon sequences
Seq C1 exon
CTGCGTACGCGCACTTCCGGTCTTTGTGGCTTGCAGCTCGGGGTGGGTGGCTCATTTCCTGGCCGCTCCTGGGCTTCGCG
Seq A exon
GTGAGGGACGTGGGCCCCTAGGAAGAGGGAGGTGGGGTTGGGAGCGCGCGCCGGACAGTGGAGGAGCTCCGCTCCTCGGCCTGCCCATCCCCAGGTCGCGGCCCTTTGGCCCGCGCGGCGTCTCCAAGCGACTGGGGAACTCAGAGGAGGCCAGCACTCAAACTCCTGCTTTCCAAAGGAAAACGCAGTTCCGCTGACCCCGTGACTTCGTAAATGCTGCGGTTTAACCAAGGATATAAAAATAGAAGGGCTAGTTAGTTAGTTAGTTAGTGCGGCCGGACTGGTTAAACCTTAAATTTGTAGGCTAAATATTTTAATTCATCTCTTAACGTTAACCGTAGTGTGAGGAATGAATTTTACTCATCTGTCCTGACAAACTAAGGGCATACATTCCTATCGATATCTCGCCATCCTAAAAGCAGGTCAAGTTTGGTCTGTGTCACAACATTTAATACCTATTTGTTACCATATTTTGCTTTTGAACATTTTTAGTCTTGGGATATTCTAAGCTTTTTCAGAACTGATACGGATCTCTTTGCTGCTTTTGTGTATGTGATACCTATCATGTTTTTGAACACATGGTAAGCATTTTACAGATACGTCTTGGTTCTTGGTCAATTCCTCTGTAGACTCGTTTATTCATAAGCAAAAATCTTAATGCTCAGTAAGTGCCTCAGTGTTTGTTGAAGTAATTCGGTAAACACCAAATGCGATCAAATGACAAATATCCAATATTTACATCAACTCATGTTTAATGTGAACTTTTAAAAAAACGTTATTACTGCCTTAAATGAAAATCAACATTACTTGCTTTAGATAGAAAGTAAGTAAAAATAAATGTTTAAAATCAGTATTACTAAATTCTGCCTAAATATTTTTACTCTTGGAAGTCTGATTCTGAAGCCTGTATTTTATTTAAAAGAGAGTTCTACAAGTTTTATTAATACATACATGTTAAAGATAGACTTTTCTCCTTGATACAATCAGAATTGAAAGAATTGGAAAGGAAATTTTCTCACTATGTGATTGATGTTAATGTTGCATTCACATTCTTAGGCTTCTAAAATAGTTTTTTCTAACATTAGTGGTAGGAATTCTTCATAATGGGAGACACTAATTGAGGTTAATGATTTTTAGTTTATCATCACATTATTGTTTTATTTAGTGATAGCCCCAAATCTACTCCCTTTCAATATATTACTAAAGTTACTCATCTTTCTTATTACAAGTACTTAGAGATTTTATTGATTGCTGTAAGTTAACTGCTTTTATATCCTTCAG
Seq C2 exon
GAAAGAAGAGATTACTCACACTCCTTCGCAAGCACAGAACCAGTTGTACTGAGCTTTTTGCTAAGCTGTTTCAGCCAAGAATGGCTGTGGAATCTGGAGTGATTTCAACCCTGATACCTCAGGATCCTCCGGAACAAGAACTAATACTAGTGAAAGTAGAAGATAACTTTTCCTGGGATGAGAAATTTAAGCAGAATGGGAGTACTCAATCCTGCCAAGAATTGTTTCGTCAGCAATTCAGAAAATTTTGCTACCAGGAGACACCTGGGCCCCGGGAGGCTCTGAGCCGACTCCAGGAACTTTGCTATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCTTAGAACTGCTGGTACTGGAGCAGTTCCTGAGCATTCTGCCTGAGGAGCTGCAGATCTGGGTTCAGCAACATAATCCAGAAAGCGGCGAGGAAGCTGTGACCCTGTTGGAGGATTTAGAGAGGGAGTTTGATGACCCAGGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186812-ZNF397:NM_001135178:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.132
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=68.1)
C2:
PF0202312=SCAN=PU(97.9=68.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTGGCTCATTTCCTGG
R:
CAAAGTTCCTGGAGTCGGCTC
Band lengths:
342-1623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)