RnoINT0168176 @ rn6
Intron Retention
Gene
ENSRNOG00000048101 | Zfp397
Description
zinc finger protein 397 [Source:RGD Symbol;Acc:6504280]
Coordinates
chr18:15856801-15858907:+
Coord C1 exon
chr18:15856801-15856996
Coord A exon
chr18:15856997-15858410
Coord C2 exon
chr18:15858411-15858907
Length
1414 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
AATGCTTTCATGTATTGTAGGAA
3' ss Score
9.66
Exon sequences
Seq C1 exon
GACGTGCCTCAGGTCTTTGTGGCTAATGTCCGCCCCCTGTGCTGCTCTTGCGCTGTACCTGGGGCTCCGGTCGGCGGGAAGGCGTGTGGCAGGTCCTGAAGAGACCCCTCGACCGCCGCTTTCCGCTGGACAACCCCCGTGGTGCCCCTTCTGGCACGCGCCTACTCTGTGCTTTAACCCGGAAGCTAAAAATAAG
Seq A exon
GTGCGTTGCGGCGAAGGTGTGGGGCGGGTGTCTTGTTAGCCGGTATGGGTAGCAGTGGTGTCAGCTCTTGGGATCCTTTCACTTGGGACTGAGGTAGAGGGAGGGAGCGGACCGAGCGACTGAGAAGCGCAGGGCGAGCGGGTCAGCGTCTGGGTGAGAGCCGCTTGAACGCCGCGCCAGGTAGTACGGGGGTCAGGAGTTCCAGCTTGCAAGGACGCAGGCTTAGTTAATGTGACCCGCGCTGGTTGTCTGTAGGGGAAGCAAGGCATACTGACATTAGACTACTTGACAGGGGTCAGATTTCTCTGGTGTGGGAGTGGGGCTGGGTTAATGTGTAAACGGGGAGACCAGATATTAACACGCACTGGCGGGTGGTGGGGAGGGCTCTCATTCTGCTCAGCCTTGTGAGCTTAGGGCCGGGTTTTAACATAAATGAAGGAGCATATAAGTCTCTGTATACATTAGAGTCGTGTCTGCTCTTTATCTCCAAATCTAGTAAATGATTACTGCCATATTTCATTTGAATTTGGAATACTCAGGCTTTTGAGAGCGAAGTTGACTTTTGGCGTCCATAGTAACATGTTTTTAATCCAAGCTAAGCACTTTACAGTTAAGAGAATTCCTCACTAAATTCATTCATAAGCCAATCCTTTCCTCAATACTGGCTCAGAACAAAGTCCACACAAAGTAAGGGCCTCCACGTTTTTGAAAATTTCAGTATATGAATGGGACCTAATGACAAATATACAATATTTTAAAGAAATTTATGTTCAGTGCGGATTTTAAAATTTTAAAACCTTAAATGCAGACCAACACTACAGTTACTTTAGTATACACAGTTACTATAAACAGTAACTAAAGAAAAAAAATTAAAGCCAAAAGCTGGGTTTGGTTCTGCATGCCTTTAATCGAAGAACTGCAGGGGCAGGAAAGCTCTGAGTTCAAGACCAGCCTAGTCTACATAGCAGGTTCCAGGACTACATAGAGACCCTGTTTTAAAAACAAACAGGAGAAATCTGCAGCCTGTATTTTATTAAAATTGTCTGTGGTTGGGGATGCAGCCCTGTGGTGGAATGTTTGTCTAGCAAGAACCTGAGTTCACTGTCAAGGGTGGGCAAGGATGTAGGAAACTAAAATGTTTGGCCTACTGTTTCTAAGGCCCTGAATTCATTCCCCGCCGGAGGAGAGTCATGAATTCCATCAGGACTGAAAGATAACTGAAAAGGACAGTCATATTAATTTGCATTCTTATACTTCTAAAAGAGTTTTTGTCAGTGGTAGGAGTTCTACACAGTAGATGATTGTTAATGCTTTGTCTATATTTAGTCTTGAACCTGTTTATTTTCAATGTTACAAGTTTTTAGAGTTGTTTTTTTTCCTACGCTGTAAGTTAAAATGCTTTCATGTATTGTAG
Seq C2 exon
GAAAGAAGAGGTTACTTGGGAAACTCCTCCCCAAGCACAAAACCCAACTGTACTAAGCTTTTTGTGAGCTATTTCAGCCCAGAATGGCTATGGAATCCAGAGCAATTTCAACTTTAAAACCTCAGGATCATCAAGAAGAATTAATACTCGTGAAAATAGAAGACAGCAGCTTTTCTTGGAGCCAGAAATGTAAACAGAATGGGAGTGCCCAGTCTTGCCAAGAACTGTTTCGCCAGCAATTCAGGAAGTTTTGCTATCATGAAACACCTGGGCCCCGAGAGGCTCTGGGAAGACTCCAGGAACTCTGCCATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCCTGGAACTGCTAGTGCTGGAGCAGTTCCTGAGCATCCTCCCTGAAGAGCTGAAGATATGGGTTCAACAGCACGGCCCAAAGAGCGGTGAGGAAGTTGTGACTCTGCTGGAAGATTTGGAGAAAGAGTTTGATGATCCAGGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048101:ENSRNOT00000071548:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.109
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=68.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGCCTACTCTGTGCTTTAA
R:
TGATGGCAGAGTTCCTGGAGT
Band lengths:
353-1767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]