HsaINT0187127 @ hg19
Intron Retention
Gene
ENSG00000197024 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:18373]
Coordinates
chr7:148844560-148851432:+
Coord C1 exon
chr7:148844560-148844858
Coord A exon
chr7:148844859-148851036
Coord C2 exon
chr7:148851037-148851432
Length
6178 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
CATCTTTCCACTGCATGCAGACA
3' ss Score
5.95
Exon sequences
Seq C1 exon
AAAGCGCCAGCTGAGGGGCCGCTGCGGGTGGAGTGCGGCGGAGTCGGCCTCGCGACCCCAGCTTGATCCGCCGCCTGCTGCACCGCGCCTCCGCCGCGTTCCTGCGCGTCCCGAGCCCCGACGGCCGCGTGAGTCCCGTCCGTGCGGGGAAGGCAGGGCCGGGTCGGCGCCGCCTGTGGAGAGGACCCGGCGGCCGGGCCTGCTTGGAGCCGGGCGCGGTGGCAGCGGCGGCAGCGGCGGCGACTTCCGAGGCCCGGGCTAGACAGCGCAGGGCCATGGCTGAGGCGGCCCCGGCCCCG
Seq A exon
GTAAGGGCGGCCGCGCGCGAGTGTTGTGAGCCCCCGAGACCCAGACCCCGAGGGAGGAAGGCGGGCGGGCAGGGAGCTGCCAGGCATAGGCGCCGTTCTCGGGTCCCGCCGGCCACGTCGCCTGTCGCCCGTGCTTGGCGGCTGCAGCCTCGCGTGAGGGGACTTAGCGGGTGGGTGTGAAACCGCCCACCCGGGGACACCAGGCTGGGCCGCAGGTCTGAGGGGCACTCGCAGGCAGCTATGAGACCCGGGGCCCTGCAGTTGGGTTGAAGTCGAGGGGGTGCCTGCTGCGTGTCAGCCCCACGCCTGCCCGCCAGACGCGCAGCGGGGTTGGGCTGGGGAGCCGTCAGCCATTCTCGCGGCCGCGGGAGCGTTCGTCACCAGCAATCTGAGCGGTGGCGCGGGCGGCATTTAAGTGTGCGGAGGCGCATTCCCGCCGCGCTGCGTGACGCCTGGGCTCCCGGCACCGGACTCGGGACACGCGGGAGGCCCTCCCGAAATAGCTGCCGAATGAATGGTGCGGACCCGGAGGCTGGAGTGGCCTCGCGTGCGTGGCGGTTCATTCGCGGGTGTTTGCCAAGGCCTGCGGGGGCCGGCAGCGGCCAGTTGCCAGGGCGACCGAGGCGACCGGGCCGCGCCTGCACGCAGCCCCGTAGAATGAGAAGGGGACGGTCAGGCCGCGGGGAAAGCACTGATCGCATTTGCCACCCAAGAGGTCTTTGGTCACCTCTAGGAGAGCAATTGTACTGGGTCAGGAGCCACCCTGGCACATGAGGGGTGACTGGGAAAAGGAGGAAGAGCAGCGATGGGTAGGGGGTAGAGCAGAGGGAAGTGCCACCTCCACTCTTGGACCTGTTTTTCTTTTTTCCAACCTTTTTTTTTGTGTATAGGTGGGATGGTAGCGATGATCCTGTGTTGTGCCAGTCCTGGCTAATAGAAATATAAGGGAAGCCGCATACAAAACTCTAAATCAAGCTTGTCCAACCCGCGGCCCCCAGGCCGCATGCGGACTAGGACTGCTTTAAATGCGGCCCAACACAAATTCGTAAACTTTCCTAGAACATCATGAGATTTATGCACGGACCTTTTTCTTTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCTCATCAGCTATCATGATCAGTATTTTATGTGTGACCCAAGACAGTTCTTCCAGTGTGGCCCAGGGAAGCCAAAAGATTGGACACCCCTGCTTAAATTCTCTAGGCGTCACGTTTAAAAAGTAAAAAGCCAGGCGCTGTGTTGTGCACGCCTGTAGTCCCAGCTAGGCCGGGGGCTGAGGCGGAAGAATCACTTGAGTCCAGGAGTTCGAGGCAGTCCACACCGCGTCTCTAAAATAAAAAAAATTTTTGAGAAGTTAAAAAATAAATAGATGAAATTAATTTTAATTATATATCTAACTCAATATATGCAAAATATTATTTCAACATGTCATCAATTTATTTATTTATTTATTTTTTGAGGTGGAGTCTCACTCTGTCCCTCAGGCTGGAGTGCAGTGGCGCCATCTGGGCTCACTGCAACTTCTGCCTTGCCGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCGTGCCACTACGCCCGGGTCCTTTTGTATTTTTAGTAGAGAGGGGGGTTTCACCGTGTTTGCCGGGATGGTCTCAATCTCCTGACCTCGTGATCCGCCCGCTGGGATCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTCATGTAATCGATTTAAAACATTAATGGCCGGGTGTGGTGGCTCAAGCCTGTTATCCCAAGCACTTCAGGAGGCTGCCGTGGGAAGACAGCTTTAGCCCAGGAGTTGAAGACCAGCCTGGGCAACATAGGAAGACCCCATCTCTACAAAAAAAATTTTTTTTTTTAAATTAGCCAGGCGTGGTGGCATGCACTTGTACTCCCAGCTACTCAGGAGGTGGGAGGTGTTTGAGCCAGGGAGGTGGAGGCTGCAGTGAGCTGTGATCCTGCCACTGCCCTCCAACCTGGGCAACAAAGTGAAACCCTGTCTCAAGCAAACAAACAAATATTTTTTTCATACTAAGTCTTCAAAGTCTCGTGTATTTTATACTCATAGCACATCTCAATTTAACCACATTTCAGGTGCTCAGTGGCCACATGTAGGTAGTGGCTACTGTATTGAACAGTGCCAGTCCACCCTATGGAGAAGAATCAGGAGACAGATTGACACTAAGAAAGGAACAACCTACCCAAAAAGGTGGAAGGGGTTGGCATAAGTGAAGCAAATGTGGAGAGTTAAGATTTAAATAGGATGCAACTTCCTTAGGAAGTAAAGAAGAAAACTTAGATTCGGTTACTGATAAGTTTGAAGCAAGGAGTATGAAGAGAAAGTTGAATGAATTTAGGTCTGATTAATTTCCATCTCAAAGCAAGAGGACATGTCATCTTCTGAGAGTGGGGGCTGCAGCAGACAAGTCTTACTACTCAGTGTCAGCATCACCTGGGAATTTGTTAAAAATACAAAATCTCAGGCTGTGTACCATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACTTGAGCTGAGTAGTTTGAGACCAGCCTAGGCAATATGGTGAAACCCTGTCTCTACCAAAAATACAAAAATTAGCAGGGCATGGTGGTGTGTGCCTGTGGTCCCGGCTACTCGGGAGGCTGAGATGGGAGAATCGCTTGAGCCCATGAGATGGAGGTTGCGGTAAGCTGAGATTACACCACTGCACTCCAGCCTGGGTGACAGTGAGACCTCATCCCAAAAAAACAAAAACAAAACCCAACAGAATCTCAGTTTTCCTTACAGACCTACTGAATAAAAATCTGTACTTTGACAAGATCTCCAGGTGATTCTTCCCCGCCTCCCGCGCCCCCCCGCCTCCCCTCCTGCCCTAGACAGAGTCTTGCTCTGTCACCATGCTGGAGTGCAGTGGCACGATTTCAGCTCACTGCAACTTCCGCCTCCTGGGTTCAAGTGATTCTCTAGCCTCAGTCTCCCGAGTAGCTGGGATTACATGGCTTGCCACCACACCCAGCTAATTTTTGTATTTTTTAGTAGAGATAGGGTTTCACCATGCTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCTGTCTCAGCCTTGCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGCCCCTCCAGCTGATTCTTATTCATGTTAGTTTGAGGACAAACTGTACTAAAAGCTGAAGGACTGTGCTGAGGCTTTGTAGTAGCCACTTTATGGAATGGGACAAGCGGCATGGAGGGCACAAGTCAGTGTTGAGATCCCCACTAAGCTTAGAAACCATTGGTATGTGGTGACAGCAGTTTACCTGGTGATTTCCTCTAGGCACGCTTACTAATCTGCTTACAGGAATGGAGAAAGAATGATTGGACTGATTCAAGGCCGGAGGTTAGCTGAGCAGGTGAGGCAGAAAGACATGAGAGAAGGGGAGTTGGAAGTGACTGATGTGATCAATTAGAGAAAAAAAGCCAGGAACGGGCAGATACCAGGAGCAAATGGAATGGTCAAAGGACTAGGTGAAATGAGAATAAAGTAGTGGGTGAGTTGGAAAGATGGGAGGTTGTCGTCAGAGAGTGGCTTATCAGGTTCATAGAGTTAGAAGGCTTTGTATACATCATCCTAGTCCAACTTATTTGTTGTGGGAATTTTTTCCTTTTATACTACTCTTTGTTTCAAAGTAAATTATTTTGGAGCAGCCTTTTATTTTCTTGGAAAGATCAATAACCCAGGAGTTATAGGTTACAAGGAGCTATGGTCATGTCAGTGCACTCCAGCCTCGGTGACCCTGTCTCTAAAAATAAAAAAATAAAAAAAAAATTAAGCTATAGAAGACATCCTGAGGTGGCTGGTTTGCATGCAAGCCTATTTATTTATTCATTCATTCAACAAAAATTTCTTTCTTTTTTTTTCTTTTTTTTTTTTTGAGACTGAATCTCGTTCTGTCGCGTAGGCTGGAGTACAGTAGCAGAATCTTGGCTCACTGTAACCTCTGCCTCCTGGGTTCAAGCAATAAGTGGATAACATTTAAACTATCCATCTTAGACTTTAAAATCATATATAAAATAATGTGGCCGGGCACGGTGGCTCACGCCCGTAATGCCAACACTTTGGGAGGCCGAGGAGGGCGGATCACGAGGTCAGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGAGCATGGTGGCACGCTCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATCGCTTGAACCCAGGCAGCGGAGGTTGCAGTAAGCTGAGATGGCACCACTGTACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAGAAATAAATAATTAATTAATTAATAATGTGATTTCCCTTAAAGATTTCTTTTTTTTTTTTTTTGAGACGGAGTTTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGAAGTTGGGTTGCTGTAAGCTCCGCCTCCTGGGTTCACGCCATTCTGCTGCCTCAGCCTCCGAAGTAGCTGAGACTACAGGCGCCCGCCACCACGCCTGGCTAATTTTTTCTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCCCTCGGCCTCCCAAAGTGTTAGGATTGCAGGCGTGAGCCACCGCGCCTGGCCTAGATTTCTTTTTTTTTTTTTTTCTGAGACGGAGTTTTGCTCTTATTGCCCAGGCTGGAATGCAATGATGCGATCTCGGCTCACTGAAACCTCGGTCTCCTGGGTTCAAGCGATTGTCCTGCCTCAGCCTCTGAGTAGCTGAGATTACAGGCATCTGCCACGATGGCCGGCTAATTTTGTATCTTTAGTAGAGATGGGATTTCTCCACGTTGGTCAGGCAGGTCTCGAACTCCCGACCTCAGGTGATCGGCCTCTCAAAGTACTGGGATTACAGGTGTGAGCCACCCACCGTGCCCAGCCTCTTTTTTTTTTTTTTTTTGAGACACAGTCTCCCTCTGTTGCCCATGCTGCAGTGCAGTGGCATAATCTTGGCTCACTGTAACCTCCACTTCTCAGGTTCAAGCTGATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGTGTTACAGATGTGCACCATCACCCGGCTAATTTTTGTACTTTTAGTAGAGACGGGATTTCACCATGTTGGCCAGGCTGGACTCGCACTCCCAAGCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCGGCAAGAATTTCTTTTTTTGAATAGTTCAACAATTATTTATTAGTGGGTCACAATGGCACACACCTGTAGCCCCAGCTACTTAGGAGGTTGAGGCAGGAGGATTGCTTGAGTGAGCCAGCCTAGGCAACATAATGAGACACCAAGACCCCGTCTCTAAAAAGAAAAAAATGTATTTATTGTAGGCCAAAGTTTGCCTGTCTGAAAATTTCGTTATGTTGGTTCTAGTTCTGCCCTCTGGAGTAACATAGTGTAAGATGAAACAAGGCTGTTCTGCCTTCTGTTTTGTAACCCTCATTATCTGAAAACAGCTCTCATGTTTTCTTCAGATTCAAGATTCTTAGCTTATTCAGCCATTACTGAATGGTGTGGTTGTAGTTTGTAAACAGGGTGATTGACAGGTCTAGAGCATAAGTCTATAATGGATTTATCAGAGGGCACTAGGTTCAGTGAGGCCTGGAAAGGATCCTTGTGCACATTTGCCTTTTCCAGAGATAGAGGATGCTGCAGCAACCTAAGCTGGGCCTTATAGCGGAGGAAATATACCAGACTAGTTCAAGAGCCAATTTCATTAATTCACTGTCTTACCCAATCTATCCCAGAACCACCAAATCAGGTCTCTTGGCTGTTGATGCCAGTGAGCTCCAGAAAGATGAGGCATACGCAGGCAGTACTAGAACTATATTCAAATTAATCTCTGCTGGACAGTTAAGCAGTCCTTATCTGATTTTAGTTTGGAGTTAGGGTTCCTTCTAACACTCAATGTCTTGTTCCATCTTTCCACTGCATGCAG
Seq C2 exon
ACATCTGAATGGGACTCCGAGTGCCTTACATCCCTGCAGCCCCTTCCTCTTCCTACACCCCCAGCAGCAAATGAGGCACACCTGCAGACAGCAGCTATCTCTCTGTGGACAGTGGTGGCCGCCGTGCAGGCTATAGAGAGGAAGGTGGAGATCCACAGCCGGCGACTCCTACACCTGGAAGGTCGGACAGGGACAGCAGAGAAGAAACTAGCCAGCTGTGAAAAGACAGTTACCGAGCTTGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGAACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACTTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTCCCTCCAGGTATTAAGGGAGATATCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197024-ZNF398:NM_170686:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=60.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)