BtaINT0165431 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020445 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:HGNC:18373]
Coordinates
chr4:113049658-113053478:+
Coord C1 exon
chr4:113049658-113049905
Coord A exon
chr4:113049906-113053082
Coord C2 exon
chr4:113053083-113053478
Length
3177 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
CATCTCCCCACTGCGCACAGACT
3' ss Score
5.14
Exon sequences
Seq C1 exon
CCAGCGAGTGGGGCCGAACCCGCCCGCCACCCGAGCTCCGCCGCACGGCCGCCCGCGTCTCCACCGCGTCCCCGCGTCCCGAGCAGGCCGGGCCCGACGGGCTAGCGAGAGCCCGGGCCGGGGAAGGCAGGGCCGGGCGCGCGCCGCCTGCGGAGAGGCCGGGGGGCCGGCCTGCGTGGGGCGGCGGCGGCGACTCCGGCTCCGGGCCGGACAGCGTAGGGGCCATGGCCGAGGCGGCCCCCGCTCCG
Seq A exon
GTAAGGGCGGCCCGCGCCGCGCTGAGCGCAGAGAGCCCGGGAGGGTCAGGGCGCCTCGGGCTCTGAGACCCGGACCCAAGGGGAGGCGGGGGGAGGGCGGGAAGCCGGCCTCCTGTCAGGCGCGGGGCCCCGGAGTTGGGCGCAGCCCCGACGACTGAGCAGAAGACGCCTCTCTCGGGGTCCCGCCGGCAGGGGAGGGCCCGGGAGCGGGGGGGACCCCGACGCCGGGCATGGGTCTGGGACCGCTCGCTCTCCGCTTCCTGCGGTCTCCGCACCTCCGTGCGAGTCCCCGTCTCCCCATCCCGTTTGGAGGTTTGCAGCAGAGACAGCCTCTTACCCCAATGGGAGGAATGAGTTCAGAGACAGTCCCCCCGCCTGGTGCCAGCCCCGCTTGCAGCCCCGCTGCAGGACACGGGGGCAGGGGAGGGTGGTGGCTTGATTTGATGTTTTCATCAGCTGTTCTCCAGCCCTGGGAGCGGACCCCACAAGAGTCACCCTCGCTGCAGCCCCCGACCCCCACACCCCCACCCCCACCCCGAGCCTCGTGCAGCCACAAATGCGGGGTGACGGCAACAGTTAGGTGTGTTGAAGGACCGCGGGAGCGCAGTGATCCCCAGTGCCCAGCGCGTGTCGGGGGATGCCGGACACACAGGAGGCCCTCTGTCGGGATTGCAGAGTGCTGGTTTCCGAGCGCGGGATTACCTTCTGCGTGTTTATTCATCCAGCGGATGTTTACCGCAGGCCGGCCGCGGGGCCAAGCCGGCTCTATCCGTGGCTAAGCCAGCCGCGCTGGCCAAGACCGTCCCTGCACACAAGAGCCTCGTGAGAACCAGCCAGGGACGCGTCAATACCAGGACCGGATAGGGAGGCCCAGGATTTGCCAGCTAAGAAGCCTCTGCGCACCCCAAGTTCAGCCATTGTAATGGCTCAGGAGCCAGACTGGCCTACTGAGTTGCTAAGTGAGAGGAGGAAAAGGGGAGCAGCAGCAATGGGGCTGGGGACGGAGCAGAGGGGACCTATTTTTTCCCTTTCGGATCTTGTTTTTCCAATATGGTAGAGACGATCGTGTGTCTGTGCTAGCCCTGTCCAATAGAAATGTAATGGAAGCCATATAGATAACCTTAAATTTTCTAGTAGTCACACTTTGTTATTTAAATTTATTTATTTATTTATTGCCAGACCCTCTGCAGTGAAAGCTGCAGAGTTCAAACCACTAGGCCGGCTGGGAATTCCCAGTGGTCACATTTTTTAGAAGTAAAGAGAAACAGATGAAATGAACTTTCATGATATGTTATTTAGCCCCGTGCATACAAAATATTTTAGTATGTAATTAGTATTAAAAAATTATCGATGAAGTTTTACATTTGCCTCCTCATAATACGTCTTCGAAACCTGGTGTGTGTTTTATACTCACCGCACATCTCAATTGAAATGAGGGCATTTCGGGTTTTCAGTAGCCACACGTGGCTACCATATTGAACAGTGCAGGTCTATCCCATGGAGAAGACTCAGGAGGGATTGAAATATTGACTGTAAAAAAGAGATAAGATCAGTGTATTTTAAAATGTGGAAGGAGGTGGCATTTAGAGCACAAGGGTTTGAGAAGGATGAATCTTTTTCCTGAGGGAAGGAAAGAAGAAAGCATATATACTAAGCGACTGATGAATTTGAAGTGAGGAGTGTGAAGAAAAAGAAGAGAAAGTTGAGAGAGACTCCCCCCATTCCCACTCTCCAGGGTCTAATTACTCTTAATTCTCAAAGTAGGAGGTCATGTCATCTCCTGAGAGGCAGGGGCCTGCAGCAAACAGGAGGCTTACTGCTCAGCCTGCAATCCCTGAACCAGCAGTGTTGGCATCACCTGGGAGCTTGTTTAAAATGCAGACTGTCAGTTTTCCTCCCAGACCTACTGAGTCAGAGTCTGCATTTTAAGGGGATCTCCAGATGTGCTCATTAGTTTGAGAAGCACTTTACACCAAGTTGAAGAGGGCCAGGGGCTTGTAGTGGCCAGTATGGTGGAGGGGGGAAGAACCAGGCAGTGTGGTGTCCCTGCTGAGCTTAGAGACCAGGGGTGTGTGGTGACACCAGTTTACCCTGTTATGCGACTTCATTTCCTTGGGCTTCCCAGCCTCCTTCCAGGAACAGAGAATAAGAACAATTGATTCAAAGCCGGAAGTTAGCCGAGCCGCTGAGGCAGAAAGACAGAGAAGTGAAGGGTTGAAGTTAGCTGAAATGATCAGCCAAGGAAGAAAGCAAAGCCTGGAGCAGGCTGGTAAACCAGAAGCAAATGGAAGGGTCAAGGGTTCAATGGGATCGCAGAGCAGGTGAAAGAAAAGTAAGGTTGTGGGAGCCAGAGAGATCAGAGGTTGTGGCCAGAGAGTAGGTTATCAAATTCATAGCCAGAAAGCTTTGCAGAGATATCCTCCTCCAACCTCCTCTGTTGTAGGAATTTCATTTTTTAAAAAAACTACACTGATGTTTCAAAGTATGCTCAGTGAACGGGGGAGGGGGGAGCCCGTTATTTTCTTGGAAAGACCTAGTTCCATACTCATTTATACAGACCAGTTTCCCTTCCCTAAAATTCTATGTTGGTTCTAGTTCTGTCTGCCCTCTGGAGTAACACAGAGTGGATCAGATTAAACAAGTCTGTTCTGCCTTTGGTTTTATAACCTGCAAGTATTAGAAAAGAGCCACTGTGTTTTCTCCACATGCAACATTCGTAGCTTATTCAACTACTATTTCATGGTGTGGCTGTGGTTGTCAGCTAGGTGGTGGACGGGCAGGAGCTTAATTAAGTCAGTAAAGAAGGGGTTTATCAGAGGGCACGGAGCTCGGTGAAACCTGGAGAGATCCTGGTGCGCTTCGAGCTTTTGCGGAGGCAGAGGATGCCACTGCAGCCTGGCCCCTACGGGGCTGGCTCAGGGCCTTCCACCCCAGGGAATGCCCCAGGCCACTGCTTGATCCAGTTTCACCTGGTCACTGTCTTAGCTCATCCACCCCTGAGTTCTCTTGCCTTTTGGTGCCACTGAGCTCCACAAAGATGAGGCTTAAGCAGGCAGTACTAAAGCTGTACTTAGAGTAATCGCAACTGGCCACGGAAGCAGTGCTTATCTGATTTTGCTTTGGATTAGGGCCCCTTCTAACACTAAGTGTCTCCTCCCATCTCCCCACTGCGCACAG
Seq C2 exon
ACTTCCGAATGGGATTCCGAATGCCTTACCTCCCTGCAGGCGCTCCCTCTTCCCGCAGCCCCAGCGGCAAATGAAGCTCACTTGCAGACCGCGGCCATCTCCCTGTGGACAGTGGTGGCGGCCGTGCAGGCCATTGAGAGAAAGGTGGAAGTCCACAGCCGGCGACTGCTGCACCTGGAGGGCCGGACGGGGACGGCAGAGAAGAAGCTGGCCAGCTGTGAGAAGACAGTGGCGGATCTCGGAAACCAGCTGGAGGGCAAGTGGGCTGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTAGAGAACTTGGAGAACCTGCTGAGGAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGTATCAAAGGAGACATTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020445:ENSBTAT00000027245:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=60.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]