RnoINT0168179 @ rn6
Intron Retention
Gene
ENSRNOG00000006703 | Zfp398
Description
zinc finger protein 398 [Source:RGD Symbol;Acc:1562129]
Coordinates
chr4:77519028-77523912:+
Coord C1 exon
chr4:77519028-77519281
Coord A exon
chr4:77519282-77523516
Coord C2 exon
chr4:77523517-77523912
Length
4235 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
CATCTCTCCATTGCACATAGACT
3' ss Score
5.21
Exon sequences
Seq C1 exon
AGTACTCGCTGCCCACAAAGCGCCAGCTGAGGGGCGGCTGCAGCCGGTGCGGCGTAGGCTGCCAGCTACTCAGCTACTCAGCGTCCCAGCGTCCCCGGAAGCCGGATTGCCGCGCGAGTCCTGTCAGAGCGAGCACCGCGAGACCGCGTCTTGCTGTCTGCAGAGAGCACTGAGCGGCCGGGCCTGCGTGTGGTGGCGACTCCCGGGACAGGACCGGGCAGCGGAGGGCCATGGCTGAGGCGACCGCCGCTCCG
Seq A exon
GTAAGGGCGCTGATGCACGGGCATCTCTGTCACCCGGGCCTCGGGGGGAGGCGAGGAGGCTGGGGACGGCCGCGGGCCTGGTCGCCCGCGTGGGTCTGCGGCTGTCGCTTGCCCTGAAGGGCCACCGCGGACCGCAGCGCCGGAGGACGCCGGGGCACCCGTGTCTGGTGTTTCTAACCTACACGCGCCGCGGTGCTTCGCGTCAGCCCGCGGAACGGGGAAGTGGGCTCGAGGTGTTTTTGAAATCCACGAGCCATTCTGTACAGCGGTGAGAGCTGTCGTTGCTAGGTGCGGCAGGACAGTCACCTGCGAGGCGGTGAAGGTAAAAGCTAAGGTGTGTCCTGACAGACTGCGGGACGACTGACAGCATCGCGCGCCCGACAAGCGGAGGCGCTGCGGGGACCTTGGAAGGCCGACACAGCGTAGGCTTAGCCATTCGTGCGTGTGCTCGTTTGCAGCAGGCCTGCAGTGGGCCCAGCCGTGCACGCACCAGATAGATGCCAGGGCTACCAGGACAACCGGCACAGTCCCTGCACACAGCCATTAAGGAAGAGGGTGTTTAACAGAACGTTCTGACTGGAAAGTATTGCTTTTGTTTGCCACCTAAGAAGCCTTTGGTCGGCTCGAAGAGACTTTTTTAGTAAGTCAGAAGTCAGGCGGGTCTGCTGAGGAGTAGGTAGGAAGTAAGAAAGGAAGAAGAAACCAGGGGAGCAGTGGGGAGGGGTGGGGAATAGAGCAGAGGGAAATCCTTACCATTAAAGTTTAATTTACCAAGCGCAATACTTCCCCCCATCCCCCAAACCCTTAGAGACCATTGTGCATGCTATAGGTTTATGCTGAAAACTATGCACATACTTTTAGTTCTCTAGTAGTCATGTTTAGTAGGTCAAACCATGATGGTGGCACGGTGGCTCACTCAGGAGTTTGAGAGAGGAGGATCAGAAATTTTAATATATGCTTGGCCAAATAGCCAGATTGTCTTTAAAAAAAGAAAAGAAAAAAAGAGGAAATTAATTTCAGTGAATTCAGTGAAATGTTATTTAGCCCAATGTATGAAAATATTTTAATAGTAATTTTATAAAACTATTAATGAGATTTTATACACAACACATCTCAATTGAACTGACCACATTTAAAATCCTCAGTAATCACATGGAATCAGTGGCTATGGTTTTGACGAGGGCAAGTCTGTTTTATGAAGAAGATTTTGAAAATACTGATATTTTTAATTTTAATTTTAAGAAATATTTTTAGGGGATGGAGAGATGGCTCAGCAGCTAAAAGTACCAGTTGCTCTTGCAGAGGGCCCTGGGTTGGTTCCTCACATTCACATGGTGACTAACAACAATCTGTAACTCCAGTTCCAAAGTATCTGATGCCTTCTTCTGACCCTTGAGGGCACCAGACATGCACATACATACATGAAGGCAAGGCACTGATGTACATAAATAAATCTAAATGATTTATTAATTTGAAAATATTTTTATTCTTTGAAAATTTAATAGAATGTATTTTTGATTGTTTCACTCTACTGTTCCCGACTCCTCCCAGATTCACTCCTCCTTCCCTCACAGTGTCCCCCGGTTTCTTGTCCTTTTTTAAAAATGACCCATGAGGTCCAATCTGTGCTTCTCATATATTCCTTGGGGTAGGCCATGCACTGGAGTGTCATTGGCCACCAGGAACCACATCCTTAAAAAATGGACTTTCCCTTCCCCCAGAAGCTATCAGTTGTCCATAATTCTGCAGTTATGCATGGGGGCTCATGAACTCCCCACTTCTCTTTCAGTGCTATAGTGTTGACTAGCTTGATTTCATGCAGGCAGCCACAACTGATATGAGCTCATCAGTTCAGTAGCCCTGTCACATCCAGAAGAAACGATTTGGATCCAGTCTAATCCTGGGTCTTAGAATCTTGCTGCCCTTCTTCCTCAATGGTCCCCAAGCCTTGGGATTTGGGCAGTGGTGTGGATGCCTCATTTCTGGTTGAGCACTTCATTGACAATTGTAACCCTAACTGGCCAATGTGTAGATCAGGCTGGCTTGAACTCACAGAAATATTTCTGCCTCTGCAAGTGTCACCACACTAGCTATTGTTTTGTTTTTTAATGTATCTTATAAGTTAGGAGGGTTGGTATTCAGAGTTTAAGTGGAGAGCCTGGCTTTTAAATAAGAGGAAACATTTTTCTTTGAGAAAGAAAGAAAGCATGTATTATTACTGGTAGGTTTGATGTGGGAAGAAATATGAAAAAGAAAAAGAGTTTAGGTCTAATTACTCCAGTTTCCTTTTTCTTCTTCTGGAGACAGGGCTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCTCTCTGTAGACTGGGCTGATGTTGAACTTACGGAGATCCACCTGTCTCTGTCCTCCTAGTGCTGGGAATAAAGGTGTGTGCCAACTGGCTTACTTCAGTATACTTAAGTAAGATAATCATGTCATCTCTGGAGAGTAAGGGTTCTGTCTGGATCAGTCTCCTCCCGGTGTGCTCCCTGAATCAGCAGATGCAGCACCCATCACCTAAGAGCTCTCTTAAAGTACACCATGTCCATTTCACAGGTACTGGATGAAAATATGTATGTTAACTAGATTTGGGGGGGTGCGGATCAGGTCTTGCTATTGTAGCCCTTGCTGACTTGGTACTCACTCTATAGCCAGACTGGACTGAAACTTAATAGCAGTTCTCTTGACTCAGTTTCCTCAGTGCAGAGGAAAACTTGGGGGAGTTGATTCTCTTCTTCTGCCATTTGGATCCCAGAGATTGAGCTCAGATAATCAGGCTTTATTTACTGCAAGTGCCTTTATCTGCTAAGCCATCTCACTGGCTGATTGACCAGTCTTTTCGAGTTGTTGTTGCACATTAGTTCGAGAGTTTGTAGAAGCCTGGAGATACTAGGTAGTGTAAAATGCCCCCACTGAGCACTGACCATTGGAATATGCTGACAGTATCTCACATGGTTGTGTGATTTTCTTTTTTAGGTTTACATGACTGCTTGTAAAAGCAAACAAAATGTGAATTGTTCAGCTCATTCAAATTAGGAAGTCAGCTGAGCAAGTGAGGCTTAGAGACAGGAGTGAAATGGCGTTGAAAGTGGCTGAAGTGGTCAAGCAGGGAAGAAAGCAAAACCATATACGGGTGGTAGACCAGGAGCAAATGGAATTATCATAGGGCTACAGTTATAATTAATGGGTTGGAGATCAGATGAAACGAGAATAAGATAGTGCAAAAATAGAAGGCTCTGGCCAGAGAGTGGTTTATCAAGTTCAGAGAATTAGGCTTAGTCCAACCTCCTATTTGTCCTACAGATTCCTTCCTTTTATGATACTCTTTGTTTCAAAGTACATTCAGTAATGAACAGACAGCCTGTGACTTTCTTGGAAAAAAATCTAATTCAAACATTGTTACCAGTCTGAAATTTTCCATGTATTTTTCTAGTCTGTCCTTGGAGTATAAGATTAAACAAACATGTTCTGTCTTCTATTTCATAACCCTCAAATACTTGAAAGTAGTTGTTATATTTTCACTAGACTAGACACCCTCAACTTGTTAAATTATGGTACAGTTGTAGTGTATAAACTGATTGATAGACAGGGCTAGTGTAGTGTATCAATTCATAGGAGATTTGTCAGAGAGCCCCCTGAGGTCAGTGAAACCTGGAGAGAATTCCTGTGTACATTTGCCTTTTCCAGAGATAGAGAAGGCAATAAGAAACCTCAACTTCTGGGCCTTATATTAGAGGAAATGGGCCAGACTAGCCTTAAAGTGACAATTTATTATTCATTATCTTTCCCAATCCATCCTTGAACCATCAAAGCAGTTCCTTGGCTTTTGATGTCAATAGGCTTCAGAACAACAAGGCACTATAGATATACTAAAGTTATTTTGGTTAGTATCAGCTGAACAGTTAAGTAGGGGTGTGTGTGTGTGTTTATGTGTATACACACGAGCGTGCATGCATGTGTGTGTTCCCCCACCTCTCACCCCCCCCACAAAGTTTCTTTGTGTAGTCCTGGCCATCCTGGAACTTGCTCTGTAGAGCAGGCTGACCTGGAACTCACAGAGTTCCACCTGCCTCTACCTCACAAATACTGGCATTAGAGGTGTGTACCATCATTGCCTGGGAGATAAGTAGTTCTTATTTGGTTGTAGTTTAGAGTCTGATTTCCTTCTAACGCTCAATGTCTTGCCCCATCTCTCCATTGCACATAG
Seq C2 exon
ACTTCTGAATGGGACTCGGAATGCCTTACATCCCTGCAGCCCCTTCCTCTTCCTCCACCTCCAGCAGCAAATGAGGCACATCTGCAGACTGCAGCCATTTCCCTGTGGACAGTGGTGGCTGCTGTGCAGGCCATAGAGAGGAAGGTGGAAGTCCACAGCCGGCGACTCCTCCACCTAGAAGGCAGGACAGGGACAGCAGAGAAGAAACTAGCAGGCTGTGAAAAGACAGTGACAGAGCTTGGGAACCAGCTGGATGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTATGGGCTGCTGCAGCGGCGGTTGGAGAACTTGGAGAACTTGTTGAGAAACAGGAACTTCTGGATCCTGCGGCTGCCCCCAGGTATTAAAGGAGATATCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006703:ENSRNOT00000008743:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=60.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]