HsaINT0187171 @ hg38
Intron Retention
Gene
ENSG00000083817 | ZNF416
Description
zinc finger protein 416 [Source:HGNC Symbol;Acc:HGNC:20645]
Coordinates
chr19:57575804-57578098:-
Coord C1 exon
chr19:57578057-57578098
Coord A exon
chr19:57575931-57578056
Coord C2 exon
chr19:57575804-57575930
Length
2126 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATCTATCCCCATCATGGCAGGGC
3' ss Score
5.81
Exon sequences
Seq C1 exon
GTTCCCGTGACTGCAGAAGCTAAACTTATGGGCTTTACACAG
Seq A exon
GTGAGTGGAGAGTGTTTCGGGCCCTCACTGATGCTGACCCCAGTGTTTGTCTCTGAGATTGTGTTCTGGGACTCTTCTCTTGGCACTCTTTGGGTCCTTGGTTCTAGGAATCCTGAACAAACATCAGTCCCAGGGTCATACATCCAGGCTGGAAGCTGGTATAGAATGGTTCCTATTGCTGGGAACCAGTAAAGTAAGGTGTGGAACGTTGTCTCAGGCTTAGATACCAGATGAGCAAGTGCTTGAAGGTCAGGCTGAGCTGGTTTAGGAAACTACAGCTGTTTTCTTTCTCATGGGAACTGAAAGCTGGGATGCAGGAATCAGACAAAAAATGGCTGTCAGTTGTCGGGTGTTTCTTCTGGAGTGTGTGATGAGCAATGACAGTTTGGGGGCAGAGGAGGTATGTGATCTGATCCAGGTCTCATCAGGTTCCCTGTGTGTGGCCAAGCTGAGAGAACAGGCTGAGTGTGAGGTATGAGATAGGAAGATAGTGAAGAAGGCTGCTGCAGTAGTCCAGGTGAGTGTTACTGGTGGCTGGACTTGTGTGGTGGCTGTGGAGGTGGTAGTTGGATTTTAGATCAGTTTTTTTAAGTAGGGAAGCCTGGATTTTGAGATAGAAAAGTAGGATTTAGGGGTAAAAGCAAGGTGTTTGGGTTTAGCAGCTGGAAATATGGAAGCTCCACTAGCGAGGATTGTAAAGTTGGTAGTAGAGTCAGTTATCTCTAGAGATAATCAGAAATTTTGATATGGACCATCTTTATTTTTAAAATTTTTTAATAAAAATCATCTGAACATGGCCCAATGGGACATCTTTTAGAGTCTGAGATGTTTCAAAGAACAGTTAGTTTAGACATGAAGTGGATAGTTTATCCTACAGGACTAGAACTGTGTTGAGGGATTCAGGATAGAGACATTTAAAAGGTGGTGGCCACTACTTGCCTAGGGGTATAGCTTGGGACACAATTAGGAGGTGGAATCGTGATCACTTTGGTAATGCTATTACCAGCCCAGGGAAGGAAGGTTGGGGGTCACTACTGGCTCTCCTGCTTGGGGACATGGTTGGTCATGGTGGGAATCACAAAGACAGGTATGGGAGAGAGGTGGCTATGGTAGGGTGTGAGAGCAAGGATGATCTGGCAAGTGGCCAAGGATCTAGGAGAAGAGTGGGCATGAGATCAATGCTTGGAAGTAATTGAGACAAGATGACACTGAGACCAGAACTAGTGCTTACTCAGCACTCTGGATATATCTACCAGGGTTTTGTGGCAACCCTTGAGGTGTCAGGAATTTCAGGGAGGTGGATAAGTTGAGGGGCACAGGTGGTCATCTGGGAGTTATTGGGCCTGAGGTGTGGGGGTCCCCTGGGGCAGACTTTGAATGAGGGTTAGCAGGAGAGGAAGGCTGTGACTTAAGAGAGGACATCAAGTGCAGCGCTAGTGCAAGAGGGCCATCGGTGTCAGATCCCCAGGTATTTCTGGGTGACTGAGGATGTAGAAAGGGACAGAGTCAGGCAGGGAGGCCTTCAGAGCAGGGTCTCTGAAGGGCTGCCTTTGGCAGTGGGGACCATTCAGCCTGAGTGGCACCGGACCTCATTTCAGTTTGCCAAGCACTTTCTGAATGTTGCATTCCAACTATCGTGGGGATGCCAGAGAGATGCCTATGGTGTGGGGCAACAGGGTGGAAATAGCCGTGGGAGTGAGATTGTTTGAGAGAGTGTGTGCTTCAAAGAGTGATGTGCATATGGAGAGGAAGTGTGAACTGAACAACCCATGGCCATGGCATTGAGGATATAAGAATGATGGCAAACCTCATCATTGTTTGTATGTGAGTGGCATAATTTTGGAAACCCCAGGAGAACTGTCTGACAAGACAAAATCCAGCCCTATATGCTAGACCCAGAGTTTAAAATGGCATTTCCTGGCCCACCTGCCTGTTGGTGCTGTGGGAAGACACAGTGATGATGGGACCATGAGGAGAGGGCAGGAATCAGTGCCACCAGGTCTTGGTATCTCCTCTGAGGTGGGGCTTAGGTATGGGGATAAGCAGGGAAAGGATGTGTGGGGGGCATGAACTTGGGGTCCTAGGAGAGAATCTGATCATGGAAAGATCTATCCCCATCATGGCAG
Seq C2 exon
GGCTGTGTGACCTTTGAGGACGTGGCCATTTACTTCTCCCAGGAAGAATGGGGGCTCCTTGATGAGGCTCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAACTTTGCACTTATAACTGCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083817:ENST00000196489:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains