HsaINT0187180 @ hg19
Intron Retention
Gene
ENSG00000105136 | ZNF419
Description
zinc finger protein 419 [Source:HGNC Symbol;Acc:20648]
Coordinates
chr19:58001515-58002965:+
Coord C1 exon
chr19:58001515-58001553
Coord A exon
chr19:58001554-58002835
Coord C2 exon
chr19:58002836-58002965
Length
1282 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTCTACTCTGTCCATCTTAGCAG
3' ss Score
5.38
Exon sequences
Seq C1 exon
GTTCCTGTGGCTGCAGACTTGCTTACAGACCATGAGGAG
Seq A exon
GTAAGTGGAGGATGTCTCAGGTCCTCACACTCCTGCACTCCTACCTACATGGTCTTCAGAATTATGGTGTCTTGAGGCTCCTTGCTGGCTATTCTCCCTACCCTTCCATTTGAGTTCCCTGGAAGATGGTCACACACAGTCAGGGCCCTGAGTCCAGACTATATATTATTTTTATTATTTTCTTTTAAGACAGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAAAGGCGCGATCTCGGCTCACTGCAACTTCTGGCTCCTGGGTTCAAGCAATTCTCCTGTCTGAGCCTCCCGAGTAGCTGGGATTACAGGCATGCGCCACCACACCAGCTAATTTTGGATTTTTGGTAGAGAGGTTTCTCCACGTTGGTTAGGTTGGTCTCAAACTCCTGACCTCAGATGATCCGCCCGCCTTGGCCTCCTAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCAACCCAGACTATGTATTCTATGGAGAGGTTCTCATTTCTGGCAACCAATGACAGGAGGTTTAGAAGGCATAGTGATCAACATTAGAAAATACATGGAGGTAAGGTTGAGCTGGGAATGCTTAGACAACCTCAGATCTCCATTATGTCTGGGGGAAGCATCAGCGGGTATAAGGCCAACATGAAGTGATTGGCTGAGGAGCTGAGCTGAGGTGTCCTGATATGTGTGCAATTCCAAGTAGCTAAAGATGAAGCAAGAAAAAGAGCCAAGGAGGGAGGCCTTCAAAGTGGGGCTGAGGATTGGCCCTGGCAGTCAGTGCCATTGGGGGTCTGGGATGGCACGGAGTTCTGATTGCATTTGGTAAGTGCCCTCTGGATGCCATGTGTAGACTGGCATGTGGTGACACTAGGGGAAGCACATGAGGTGATGTAGAGGGTAGTGGTTGTGGTACAAAGTATGTGCACATTCTAATAAGTGTAAACAGATGTCCCCAGGACCTTGTACTGGGGGCTTCAGGGAGAACACTGACACAAATTTGATTGTATTTGAGAAACACAGTCTAGGGGATCCAAGGTAAATTGTCTGGCAAGAGAAGAGTAGGACTCTGCATACCATGCCCAGAGCTGAGATGGACTTTATCTGCCTACCTGCCTATTGTTGCTCAGTGGGAGCATGAGGAGAGAGTGGGCATCAGTGGCTCTGGGGCAGGGTCTCTCCTCTGAGATGGGGATTAAGGAAGAGGGTGAGCAGGGGTGGATGTTTAGGCAGATGCCTAAATTTCCCAGTAAGGAGGCTGCAGATAAACTCTACTCTGTCCATCTTAG
Seq C2 exon
CAGGGCTATGTGACCTTTGAGGATGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGACGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105136-ZNF419:NM_001098491:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)