MmuINT0179840 @ mm9
Intron Retention
Gene
ENSMUSG00000066838 | Zfp772
Description
zinc finger protein 772 [Source:MGI Symbol;Acc:MGI:2385265]
Coordinates
chr7:7158957-7160274:-
Coord C1 exon
chr7:7160236-7160274
Coord A exon
chr7:7159084-7160235
Coord C2 exon
chr7:7158957-7159083
Length
1152 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CAAATTTCTCCACTGATCAGGAC
3' ss Score
4.88
Exon sequences
Seq C1 exon
GTTTCCCAGTATTCAGTGAAACCTGCCAACCAGGAAGAG
Seq A exon
GTAAGTGGAGGGTGCCCAGGAATCACATCCTCACTTAACACATAAGTGACCTCAGGGACTGTGGTGTCCTGGGACTCTGTGCTGGAATTGTCTCTGTCCTTCCTTTGGATTTCCCTGGCACATGCTCAGAATGAAAGGTCCCCACGTCCACAGCAGGGATTACATGGACAGGCTTCCCTTTATGGTAACCATTGGCTGAAGATTCAAAGGTCTTAAAGCTCCAGTGATGACATTAGACCAGGCCTGGAAGTGAGATGGGTTGGGGATAATTAGAAATGCTCAGGCATGCATGAGATCAGCTGGCTTTAGGGGAAGGTAGGAATTGTGTTAGCACAACAGTTGAGGGCTAAGTCTGCATACTGAGAGTGAATGGAAGCTCAGTGTGAAGACTGAAGTGTGTGTCCTGAAGTCATGGACACATGGCTTCCTGGCCTTTGTGCCAGGGACAGAGTGGACAACAGTGCCCCAAATGTAGTCTGTGTGAAACAGATGATTGGGAGGAATCCATGTTAGTGTCTGGTTGGAAGGAGTCCATGTGAATTCTATGATTGAAAGGAGGGACATTCTTCTCGCTTGGATTGACTCCAGCTGTGATGGTTTCAATGAACTCACCCTCCAGATAGTCATAGACTTGCATACTTGTTCCTTATTGGTGGAACACTTTGGAGATGATAATGATGTACAGCCTTGTTGGAGGAGGTGTGTCACTGGGGGTGGGCTAGTACATCTCAAAAGCTCTTGCCATTCCCAGTTAACTCTCTCTCCCTGGTACTGTACTATGGATCAGGATGTAAGCTCTCAGCAACTGTTCCAGTGCTGTGTGTGCCTGTATCCATCCTCCCTGACATGGAGGTTACAGATTGACCCTCTGAGGTGTAAGCCCCAATAAACTCCTTGTTATTATAAGTTGCCTTGTTCATGGTGTCTCTTCACAGTAATAGAAAAGTAATTAAGCCACTATGTCAACTTTACTGTTATTGCTGAGTGATGAGCAGAGTAGACGGTGGGAACTTGAGAATAGACTAGCTATCAATAGAATAGATTCACAGCCTGGTACCCTCTGAGGTAGGAAGATAAGTGGGAATGACTTAAGGGTTCCAGGAATACCTGACAAGGAGGATTCATATGAATTCAAATTTCTCCACTGATCAG
Seq C2 exon
GACTGCTTATCCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGACACTGCTTGATGACTCTCAAAGGCTCCTGTACCAGACTGTGATGTCAGAGATCTTAACACTCATGTCTTCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066838-Zfp772:NM_145577:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: