HsaINT0187181 @ hg19
Intron Retention
Gene
ENSG00000105136 | ZNF419
Description
zinc finger protein 419 [Source:HGNC Symbol;Acc:20648]
Coordinates
chr19:58002839-58003579:+
Coord C1 exon
chr19:58002839-58002965
Coord A exon
chr19:58002966-58003480
Coord C2 exon
chr19:58003481-58003579
Length
515 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TCACCTGTCGTTTTCCTTAGGAC
3' ss Score
12.47
Exon sequences
Seq C1 exon
GGCTATGTGACCTTTGAGGATGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGACGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGG
Seq A exon
GTAAGGTTCTCACACCCCACCCCAGCATCCTGAGCTGGGCTCGGCTTTTCCTCCTTTTCCTAGGGAGAGGTCTGTTCTTCCCAAAGCTGAACTGTGGGCACTCATTCCTTCTCCAGTATCCTGAAGTAGCTATTGTAATAGGCCTGGGCTGTGTATACTACCACCTTCTCTCCCCAAGCTGCCCCACAGCTGTGCAGGAAAGGGTTTGGGGGTCAGGAGTCTTGCAGTCAGCTTGATGGATCTTATCCCTGGTGGCCTCTCTGTGGCCTGGTGACACTGTGCAGATCTGTGGTAGTTCTATTCCCCTACATTCTGCCTGTCTCCTCTAGCCAACATACCTGGGTGTCGGTCTGTGCCAGCAATTGAGTCACCAATGTGATTGCTGTTTGACTGTGTTGTTCCTGCAAGACCCTCCTCCAAGGTTCTTTCTGTACTATTTTGTTTTCTTTCCTGTGGTCCATGATGAGATAAGTCATTCTGGCTCAGTGCTGCCACTCACCTGTCGTTTTCCTTAG
Seq C2 exon
GACTTGCATCTTCCAAGACCCATGAAATAACCCAGCTGGAGTCATGGGAGGAGCCCTTCATGCCTGCTTGGGAAGTTGTGACTTCAGCCATACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105136-ZNF419:NM_001098493:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGACCTTTGAGGATGTGGC
R:
CTCTCGGTATGGCTGAAGTCAC
Band lengths:
222-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)