MmuINT0179841 @ mm9
Intron Retention
Gene
ENSMUSG00000066838 | Zfp772
Description
zinc finger protein 772 [Source:MGI Symbol;Acc:MGI:2385265]
Coordinates
chr7:7158224-7159083:-
Coord C1 exon
chr7:7158957-7159083
Coord A exon
chr7:7158311-7158956
Coord C2 exon
chr7:7158224-7158310
Length
646 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTTTGTATCATGTCCTTTAGGAC
3' ss Score
9.2
Exon sequences
Seq C1 exon
GACTGCTTATCCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGACACTGCTTGATGACTCTCAAAGGCTCCTGTACCAGACTGTGATGTCAGAGATCTTAACACTCATGTCTTCTTTGG
Seq A exon
GTAAGAACCTGCCATCATTTCAGAGCATGTCTAGGCTTTCCCTTTTTTTTTTTTTTTTTTTTTGAGAAAGCTGTATCTTTCTCAAAACTGGCCTATGAACACCCAGTCTTTCCCCCACTGTCTTGGAGTATAAAATACAGACTAAAAATCAAGTCAAGTTTCACAACAGCTCTGTCTTTCTCAATTGCAGCAAAGGCACACAGGAATCAATTTGGGGTTAGGAATTTTTTGGGTGTAGTTTGAGACATCGCTCTACCTTGAGAACCCTAGCTGTGCTGGATGTGCTATGTAGACCTGGCTGTCCGCTGACTTGCCAAGGTCTTTCTGCTCTGTCTTTTGAGAGTTGCAATTAAGGGATTGCACAACCACCTCTGGCCTGGTATCAGGAGTCTTAACACTGATTGCTTCTCTGGGACCTGATGACACTGTAAATATTTGGCATCTTTGTGATTCAAGTACTTCTAGTGACATGCCTTATGTCGGAATGTAGCAGGAATTGTGGCACTGGTCAGCCCACTATTATTTTTTTTTATTTTATTTTTGCAAGACACCCTTAACAGGATTACTCTCATTTGTTATTCTTGTCTACTGTATGGGTTGCATCACTTAGTACAGAACTGTCATTTTTTTGTATCATGTCCTTTAG
Seq C2 exon
GACTTATACCTTCTGGGATCCATGAGATGACTCAGCTGAAGTCTTGGGGAGAGCCCTCTGTGCCTGCGTTGAGATTCCTGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066838-Zfp772:NM_145577:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGAGGATGTGGCTGTGT
R:
GTCAGGAATCTCAACGCAGGC
Band lengths:
199-845
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: