HsaINT0187202 @ hg19
Intron Retention
Gene
ENSG00000130818 | ZNF426
Description
zinc finger protein 426 [Source:HGNC Symbol;Acc:20725]
Coordinates
chr19:9645864-9647032:-
Coord C1 exon
chr19:9646884-9647032
Coord A exon
chr19:9645956-9646883
Coord C2 exon
chr19:9645864-9645955
Length
928 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TTGCCTTCATTTTCTTACAGGAC
3' ss Score
10.92
Exon sequences
Seq C1 exon
GAATCCCAATAACCCTGTTTAAAGAGGAATGGAGATTGCCACTGTCCATTTAGATTAATGAGGTGTCCTGAAGTGATGGTGACATCAATGAAAGGAGGGTTCTGACACGTTCTCACCTCGCGGGATGGCAGCTGCTGATTTGTCCCATG
Seq A exon
GTAAGCTCTGTTGCTCTTTTTAGGATATCCTGTTCTAGGTTCCCTTTACACAATATAGGGTCTAGTGGTTTGGGCAGCTGGTCATGTTGCTGATTCATTTGGGAGGTGCTGAGGGGTGCCAGAACGTGCTGTCTTGTGAGTCAGGCTCTGCCTGTGAATTTTGGAAAGAGGTACTGCATAATCTCCTTCATGAATTCTAATCAGCATGATAGAGTCCCATGCTCTGGGTATATGTTTCCTTATGTGTGAAATGAGACTATTGTACTTTTCCTGATGGGCAGCACAGCTCATCATCACGTTTAGGACTGCTCTGGCATTGTATGGTAGTAGGTTGTATGTTTGCATTTTCTTTCTTTTCTTTTTTTTTTTTTTCTTATACAAAGTCTCGCTCTTTTGTCCAGGCTGGAGTGCAGTGGTGCATTCATAGCTCACTGCAGCCTCAAACTGTTGGGCTCAAGCAATCCTCCCACCTCTGCCTCCCAAGTACCTGGGACTGCAGGCACATGCCACCATGCCTGGCTGATTAAAAAAATTTTTTTGTAGAGATGGGGAGTTTATGTTCACTGTGTTGTCCAGGGTAGTCTCGAACTCCTAGGCTTAAGCAATCTTCTTGCCTCAGCTTCCCCAAGGAGATGGGACTACAGGTGTGTGTTACCACACCAGGCTCATTTTAAAATTTTTTTGTAGAGACGGGGTCTCACCGTGTTGCCCAGGCTGATCTCAAACTTCTCGCCTAAAGTAATCCTTCCACCTCAACCTCCCAGAGCACTAGGATTACAGATGTGAGCCACTGCAACTGGCCTTATGTGTGTTTTCCTGATTTTGCAGGAATATATGGGAATTTCATACTAGGAGGTAATGACCTCTAGGTAGGTGGATGTGGGGATTATGGTCAGCTCGGGGTTCTCTTGCCTTCATTTTCTTACAG
Seq C2 exon
GACATTATCTTTCTGGGGACCCAGTTTGCCTTCATGAAGAAAAGACACCAGCAGGAAGAATAGTGGCTGACTGCCTAACAGATTGTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130818-ZNF426:NM_024106:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAATAACCCTGTTTAAAGAGGA
R:
TGATAACAATCTGTTAGGCAGTCAGC
Band lengths:
238-1166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)