HsaINT0187202 @ hg38
Intron Retention
Gene
ENSG00000130818 | ZNF426
Description
zinc finger protein 426 [Source:HGNC Symbol;Acc:HGNC:20725]
Coordinates
chr19:9535188-9536356:-
Coord C1 exon
chr19:9536208-9536356
Coord A exon
chr19:9535280-9536207
Coord C2 exon
chr19:9535188-9535279
Length
928 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TTGCCTTCATTTTCTTACAGGAC
3' ss Score
10.92
Exon sequences
Seq C1 exon
GAATCCCAATAACCCTGTTTAAAGAGGAATGGAGATTGCCACTGTCCATTTAGATTAATGAGGTGTCCTGAAGTGATGGTGACATCAATGAAAGGAGGGTTCTGACACGTTCTCACCTCGCGGGATGGCAGCTGCTGATTTGTCCCATG
Seq A exon
GTAAGCTCTGTTGCTCTTTTTAGGATATCCTGTTCTAGGTTCCCTTTACACAATATAGGGTCTAGTGGTTTGGGCAGCTGGTCATGTTGCTGATTCATTTGGGAGGTGCTGAGGGGTGCCAGAACGTGCTGTCTTGTGAGTCAGGCTCTGCCTGTGAATTTTGGAAAGAGGTACTGCATAATCTCCTTCATGAATTCTAATCAGCATGATAGAGTCCCATGCTCTGGGTATATGTTTCCTTATGTGTGAAATGAGACTATTGTACTTTTCCTGATGGGCAGCACAGCTCATCATCACGTTTAGGACTGCTCTGGCATTGTATGGTAGTAGGTTGTATGTTTGCATTTTCTTTCTTTTCTTTTTTTTTTTTTTCTTATACAAAGTCTCGCTCTTTTGTCCAGGCTGGAGTGCAGTGGTGCATTCATAGCTCACTGCAGCCTCAAACTGTTGGGCTCAAGCAATCCTCCCACCTCTGCCTCCCAAGTACCTGGGACTGCAGGCACATGCCACCATGCCTGGCTGATTAAAAAAATTTTTTTGTAGAGATGGGGAGTTTATGTTCACTGTGTTGTCCAGGGTAGTCTCGAACTCCTAGGCTTAAGCAATCTTCTTGCCTCAGCTTCCCCAAGGAGATGGGACTACAGGTGTGTGTTACCACACCAGGCTCATTTTAAAATTTTTTTGTAGAGACGGGGTCTCACCGTGTTGCCCAGGCTGATCTCAAACTTCTCGCCTAAAGTAATCCTTCCACCTCAACCTCCCAGAGCACTAGGATTACAGATGTGAGCCACTGCAACTGGCCTTATGTGTGTTTTCCTGATTTTGCAGGAATATATGGGAATTTCATACTAGGAGGTAATGACCTCTAGGTAGGTGGATGTGGGGATTATGGTCAGCTCGGGGTTCTCTTGCCTTCATTTTCTTACAG
Seq C2 exon
GACATTATCTTTCTGGGGACCCAGTTTGCCTTCATGAAGAAAAGACACCAGCAGGAAGAATAGTGGCTGACTGCCTAACAGATTGTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130818:ENST00000253115:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAATAACCCTGTTTAAAGAGGA
R:
TGATAACAATCTGTTAGGCAGTCAGC
Band lengths:
238-1166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains