RnoINT0167907 @ rn6
Intron Retention
Gene
ENSRNOG00000025937 | Zfp26
Description
zinc finger protein 26 [Source:RGD Symbol;Acc:1565847]
Coordinates
chr8:21457849-21458379:-
Coord C1 exon
chr8:21458355-21458379
Coord A exon
chr8:21457932-21458354
Coord C2 exon
chr8:21457849-21457931
Length
423 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GGATGCCTCTTTTTTTCCAGAGA
3' ss Score
7.02
Exon sequences
Seq C1 exon
ATGGACATTACTAGTTTGTCCTGTG
Seq A exon
GTAAGTCCTGTTGTTACTGTTGTTGAGAGATTCTCTTGTAGGCCTACATAATGCAGAGCCAGAGATCGGTCAGTTTGTTATGGAGCGCTGAGGTGGGCAAAGAGAACTTTTGTATATCTAGTGTCTACTTGGGATCACGCAGTGCATAATCATCGCTGATTCTCTTCATCATAGGCAGTTCAGAGTTAGAGTTCTCAGAACTTAAGTGTGAAACTAACGTACTGTTCTTGACGGGTAAGACAGTTTATCTGTTTTACAGTGGGAACTGTAAAGATTGCTGTGGCATTGTGGTTACTGGAGTTTATATTTGCAAGTTATCTTGAGCGAGCCAAGTTATGTATTACTTACAAACAGATGAGCTCCCATCCTCACAGTGAATGTGGGCTTCTTGGCAGCTGTGGATGGATGCCTCTTTTTTTCCAG
Seq C2 exon
AGAGTCTGTTCTCTGATGACCAAATCTGCAGTCAAGAAGAAGAGACAGAGGGAGAAAGCACGCTGGGAGAAGACTGTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025937:ENSRNOT00000038084:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.786
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]