HsaINT0187229 @ hg19
Intron Retention
Gene
ENSG00000197647 | ZNF433
Description
zinc finger protein 433 [Source:HGNC Symbol;Acc:20811]
Coordinates
chr19:12125532-12128751:-
Coord C1 exon
chr19:12128691-12128751
Coord A exon
chr19:12127482-12128690
Coord C2 exon
chr19:12125532-12127481
Length
1209 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
GTACTTCTTATTGTTCACAGAAT
3' ss Score
6.85
Exon sequences
Seq C1 exon
GGAAAAAATGGAAACCCCAGAACATATATGTAGAGTACGAAAATCTAAGGAGAAACCTAAG
Seq A exon
GTAACTTGCACTCACATGACAAAGACGTGTGTCTCTAGAAAATCTTAGAATGGGAGAAAATGTTAAAAAAAAAAAAAGGAAACAAAAGAAATAAGCACAATTTCAATCTATTTATTCTTAGAAAATTTTCTCTAAACACATATTGAAGTGTGATGTAGGCTTGACACAATGGCCCAGGACTATATTTCAGCCCTTTGGGAGGTTCAGGCTGGAGGATCACTTGAGCCCAGGAGGTTGGGGCCATACTAAGTCATGATGGCATCACTGCACTCCAGCCTGGGCAAGAGTGTGAGACCCTGACCCAAAAAACAAATTTAAAAAGACAGATATTTAGTATTTGTAAAATAGTTTACTTTAAAATAGTACTCAGAGACGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCCGAGGAGGGTGGGTCACTTGAGGTCAGGAGTTCAAAAGCAGCCTGGCCAACATAGTGAAACCCCATCTCTACTAAAAATATAAAAATTAGCCAGGCATCGTGGTGGACACCTGTTATCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGGGGAGGTTGCAGTGAGCCAAGTTTGCCCCACTGCATTCCAGCCTGGGCAACAGAGTGAGTCTCCATCTCAAAAAAACAAAACAAAACAAAAAAAACCAAAAAACAGTATTCAGAAGCCTTCTATCATCTTTTTTGATAATAGATATGGCTGGGCCATCTTGTAGAGCCTGTGGTCCGTTCATATTCAAACAATTCAGACAGGGCAGAAAGCCTACAGTTTGCTGGATGATGTTAAAAATGGAAGTGCAGGCCAGGCACAGTGGCTCATGCCTGTAATCCCAGCATTTTGGGAAGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGTCTGGCCAACATGGTGAAACCCCGTCTACTAAAATACAAAAAATTAGCTGGGTGTGGTGGTATGCACCTGTAGTCCCAGCTACTTATGAGGCTGAGGCAGGAAAATTGCTTGAACTCAGGAGGTGGAAGTTGCAGTAAGCGAAGATCGCACCACTACACTCCAGCCTGGGCAAGAGAGTGAGACTCCATCTCAAAAAAAAGAGAAAAAATGCAAGTGCAATACTTGTGAATGAATATAAAATCACTGATAATCAAACCCATTATAATGTACTTCTTATTGTTCACAG
Seq C2 exon
AATTGTGGGAGAGAGACTCTTTGAAAGTAAAGAAGGTCATCAGCATGGAGAAATTTTGACCCAGGTTCCAGATGACATGCTGAAGAAAACAACTACTGGAGTAAAATCATGCGAAAGCAGTGTGTATGGAGAAGTAGGCAGTGCTCATTCATCTCTTAATAGGCACATCAGAGATGACACTGGACACAAGGCATATGAGTATCAAGAATATGGACAGAAACCATATAAATGTAAATACTGTAAAAAACCTTTCAACTGTCTCTCCTCTGTTCAGACACATGAAAGGGCTCATAGTGGAAGGAAACTCTATGTTTGTGAGGAATGCGGAAAAACATTTATTTCCCATTCAAACCTTCAAAGACACAGGATAATGCACCGTGGAGATGGACCTTATAAGTGTAAATTTTGTGGGAAAGCCTTGATGTTTCTCAGTTTGTATCTTATCCACAAACGAACTCACACTGGAGAGAAACCATATCAATGTAAACAGTGTGGTAAAGCCTTTAGTCATTCTAGTAGCCTTCGAATACATGAAAGAACTCACACTGGGGAGAAGCCTTATAAATGTAATGAATGTGGGAAAGCATTCCATAGTTCCACATGCCTTCATGCTCATAAAAGAACTCACACTGGGGAGAAGCCATATGAATGTAAACAGTGTGGGAAAGCCTTCAGCTCTTCCCATTCCTTTCAAATACATGAAAGAACTCACACGGGGGAGAAGCCATATGAATGTAAGGAATGTGGAAAAGCATTCAAGTGTCCCAGTTCTGTTCGCAGACATGAAAGAACCCACTCTAGGAAAAAACCCTATGAATGTAAACATTGTGGGAAAGTATTATCTTATCTTACCAGCTTTCAAAACCACTTGGGAATGCACACTGGAGAGATATCTCATAAATGTAAGATATGTGGGAAAGCCTTTTATTCTCCCAGTTCACTTCAAACACATGAAAAAACTCACACTGGAGAGAAACCCTATAAATGCAACCAATGTGGTAAAGCCTTTAATTCTTCCAGTTCCTTCCGATATCATGAAAGAACTCACACTGGAGAGAAACCTTACGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCTCACTCCTTCAAACACATGGTAGGACTCACACGGGAGAGAAACCCTATGCATGTAAGGAATGTGGAAAACCATTTAGTAATTTCTCTTTCTTTCAAATACATGAAAGGATGCACAGAGAAGAGAAGCCGTATGAATGTAAGGGTTATGGGAAAACATTCAGTTTGCCCAGTTTATTTCATAGACATGAAAGGACTCACACTGGAGGAAAAACCTATGAATGCAAGCAGTGTGGCAGATCCTTCAACTGTTCGAGCTCCTTTCGATATCATGGAAGGACTCACACTGGAGAGAAACCCTATGAATGCAAGCAATGTGGAAAAGCCTTCAGATCTGCCTCACAGCTTCAAATTCATGGAAGGACTCACACTGGAGAGAAACCTTATGAATGTAAGCAGTGTGGGAAAGCCTTTGGATCTGCCTCACACCTTCAAATGCATGGAAGGACTCACACTGGAGAGAAACCCTATGAATGTAAGCAGTGTGGGAAGTCTTTTGGATGTGCCTCGCGACTTCAAATGCATGGAAGGACTCACACTGGAGAGAAACCGTATAAATGTAAGCAATGTGGGAAAGCTTTTGGATGTCCCTCAAACCTTCGAAGGCATGGAAGGACTCACACTGGAGAGAAACCCTATAAATGTAACCAATGTGGTAAAGTCTTTAGATGTTCTTCACAACTTCAAGTGCATGGAAGGGCTCACTGCATAGACACCCCATAACCCCAGGCTTTAGGAGGCTGAGGTGGGGGGACTGCTTAAGCCCAGGAGTTCAAGACCAGCCTGGGCAACATAGTGAGACTCTGTTATAAAAATTAAATAAATAAATAAAAAGACTTCCAGTTGGTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197647-ZNF433:NM_001080411:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.9),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF0013017=C1_1=WD(100=10.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF0013017=C1_1=WD(100=9.7),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACCCCAGAACATATATGT
R:
TGAGCCCTTTCATGTGTCTGA
Band lengths:
344-1553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)