BtaINT0166117 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016721 | ZNF791
Description
zinc finger protein 791 [Source:HGNC Symbol;Acc:HGNC:26895]
Coordinates
chr7:14012314-14014398:-
Coord C1 exon
chr7:14014338-14014398
Coord A exon
chr7:14013956-14014337
Coord C2 exon
chr7:14012314-14013955
Length
382 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCTAATTTCTTTTTTAACAGAAG
3' ss Score
7.92
Exon sequences
Seq C1 exon
GGGATAAATGGGAGGACCATAACACTGATGATCAGTACAAGAACCAGGAAAGAAATCTGAG
Seq A exon
GTGAGTTGTACTTAAAATGTGAAGCTGTGTCCCACATGGGAATCTCATGTCATGAAAATTTAAAAACAAGTGGAAACAAAAGGGCACAGTTTCAAATTTATTTGTCAGAAAATTTTAACCAAAAATGTTTTCTTATGTCATGGATGTTGTTTCCCAAATAGTTTACTTTGAAACATATTCAGAGACTGCATATATAAATATCACTATGATAATAGCAATGGTTGAACTTTCTTACAGAGCATTCAATATATTCACTTTTAAAAACTATATAGTGCATAAAACCCTACACTTTCCTTGTAAATGGTAAAAATGTAATACTACTATTTATTATAAAATCATTAAAAAATCATTAACAGTGTGTTTCTAATTTCTTTTTTAACAG
Seq C2 exon
AAGTCATATATTACAGAGACTCTGTGAAAGTAAAGAAGGTAGTCAAGGTGGAGAAAACAGCGGCCTTATTCCAAATCTTAATCTGAACACGAAAAATTCTACTAAACCATGGGAATGCAGTGTGTGTGGAAAGGTCTTCATGAGTCGTTCATCCCTTAATAGGCACCTGAGATCTCACACTGCACCCAAACCATCCAAGTATCATCAGGAATATGGAAGGAAGCCTTATAAATGTAGAGTGTGTGGGAAAGCCTTCAGTTATCTCCAGCCTTTCCAAAAACATGAAAGTAATCATGGTATAGAAAAATCCTATAAATGTAAGGAATGTGGGAAATCCTTTAGATATCGTCAATCTGTTCGAAAACATGAACGAACTCACACTGGAGAGAAACCCTATCAGTGTAAACAGTGTGGAAAAGCCTTTCGATACCATCAAACCTTTCAAACGCATGAAAGAACTCACACAGGAGAGAAACCTTATGAATGTAAGCAATGTGGTAAAGCCCTCAGTTGTCCCAGTTCCTTTCGAAGCCATGAAAGGACTCATACTGGAGAAAAACCCTATGAATGTAAAAAGTGTAGTAAAGCCTTCAGTTGTCCCAGTTCTCTTCGAAAACACGAGAGAACTCATACTGGAGAGAAACCTTATGATTGTAAGGAATGTGGAAAAGCTTTTATTTCTCTTGGAAGTTTTCAAAGACACATGATAACACATACTGGAGTTGGACCTTATAAATGTAAGGACTGTGGGAAAGCATTCAATTGTCCCAGTTCGTACAGAATACACGAAAGATCTCACACTGGAGAAAAACCCTATGAATGTAAACAATGTGGTAGAGCCTTCAGTTGTTCCAGTTCATTTCGAACACATGAAAGAACTCACACTGGAGAGAAACCTTATCAATGTAAGGAATGTGGAAAAGCCTTCCATTGGCTCACCACTTTTCAAGTCCACGTGAGAACTCACACTGGTGAGAAACCATATATATGTAAGCAGTGTGGTAAAGCCCTCAGTTGTCCCACTTCCTTTCGAAGACATGAGCGGACTCACACTGCAGAGAAACCCTATGAATGTAAGCAGTGTGGAAAAACTTTCAGTTCTCCTCTAGGTTTGCAAATACATGAAAGAACTCACACTGGGGAGAAACCCTATAAATGTGAGAAATGTGGGAAAGCATTTGTTTCTCTCACAAGCTTTCGAAGACACATGATGACGCACACTGGAGATGGACCTTATAAATGTACGGAATGTGGGAAAGCATTTAATTGTCCTAGTTCATTTCGAATACATGAAAGAACTCACACAGGAGAGAAACCCTATGATTGTAAAATATGTGGTAAAGCCTTCAGTTGTTCCAGTTATGTTCAAGTACATGAAAGAACTCACACTGGAGAGAAACCCTATGAATGTAAGGAATGTGGGAAGGCATTCATTTACCGCACAACCTTTCGAGGTCACTTGAGAGTGCACACTGGTGAGAAACCATATAAATGTAAAGACTGTGGGAAAGCCTTTAGTCGACCCAGTTCATACAGAAGTCATGAGAGAATTCACACTGGAGAGAAACTTCTTGAATGTAAGCACTGTGGGAAAGCCTTCAATTGGCCCACATCCTTACATAAACATGTCATGAGAATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016721:ENSBTAT00000022971:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGGACCATAACACTGATGA
R:
ACTTTCATGTTTTTGGAAAGGCTGG
Band lengths:
342-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]