HsaINT0188419 @ hg19
Intron Retention
Gene
ENSG00000173875 | ZNF791
Description
zinc finger protein 791 [Source:HGNC Symbol;Acc:26895]
Coordinates
chr19:12735464-12740676:+
Coord C1 exon
chr19:12735464-12735524
Coord A exon
chr19:12735525-12738534
Coord C2 exon
chr19:12738535-12740676
Length
3010 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTGCTTCTAATTTTTTACAGAAG
3' ss Score
8.42
Exon sequences
Seq C1 exon
GGGAAAAATGGGAAGACCCGAATGTTGAAGATCAACACAAAAACCAAGGACGAAATCTAAG
Seq A exon
GTGAGTTGCACTCACAAGAAGTAACAGTGTTCCTTGAAAGAATCTTAAAAATGTTATGGCCGGGCACGGTGGCTCACACCTGTAATCTCAGCACTTTGAGAGGCTGAGGTGGGTGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGATGAAACCCCGTCTCTACTAAAAATACAAAAAAAGTTAGCCAGTTGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGAGAATTACTTGAATCCAGGAGGCAGAGGTTGCAGCGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAGAAGTTGTGACACTTTTAAAACAAGAAGCAAGCTTAGCTCCAAATTTATTTATTTATTTGTTTTATTTATTTTTTCTTGAGATGAGGTTTTGCTCTGTCACTCAGGCTGGAGTGCAGTGGCATGGTCTTTGCTCACTGCAACCTCCACCTCCCGGGATCAAGTGATTTTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGGACGTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGCAAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCGCCTCAGCCTTCCAAAGTGCTGGGATTACAGGCACGAGCCACTGGGCCCCAAATTTATTTATTATCAGAAAATGTTTACCAAAAATGTTTTCTCAAGTGACACAGATGTCCACTGGCTGAAAAATATTATACTTGGGCCGGGCACTGTGCCTCACGCTTATAATCCCAGCACTTTGGGAAGGTGAGGTGGGCGGATCACCAGAGGTCAGGAGATCAAGACCAGTCTGGCCAACACAGTGAAAACCTGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGCACACACCTGTCATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCCAGATCGCACCACTACACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAAGAAAAATATTGTACTTGGGAACAGTTTTGTTTGTTTGTTTGTTTTGTGAAACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGGAGTGGTATGATCTTGGCTCACTGCAACCTCTAACCCCTGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGATTATAAGCGCGCACTACTATACTGGGTTAATTTTTGTTTTGTTTTGTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCAGGCTAGAGTGCTGTGGCGCAATCTCGGCTCACTGCAACCTCCCACTCCCTGGTTCAAGGGATTCTTCTGCCTCCGCCTCCCAGGTAGCTGGGATTACAGGCATGCATCACCATGCCCGGCTAATTTTTGTGTTTTTAGTAGAGATAGGGTTTCACTATGTTGGCCAGGATGGTCACGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCAATTTTTGTATTTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCTGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGGGTGAGCCACCATGCCCAGCCAATTTTGTATTTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCCCAATTGATCCACCCACCTCGGCCTCCCAAAGTGCTAGGACTACAGGCATGAGCCACCATGCCAAGGTGTGGAAACAGTATTTTATTTTATTTTTATTTTTATTTTTGAGACGAAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCCATCTCAGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCCTGTTAGCCAGGGTGGTCTTGATCTCCTGACCTCATGATCTGCCCGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCGCCCAGAAACAGTACTTTAAAGCCTCACATATAATTTCCGGAAGCCAAGGTGAGCAGATCATTTGAGCTCAGGAGTTCGAAACCAGCCTGGGCAACAAGACGAGACCCTGTCTCTACAAGAAACAGAAAATTCAGTCAGTTGTGGTGGTGCATGCCTGTAGTCCCAGCTACATGGGAGGCTGAGGTGGGAGGATTGATTGAGCCCGGGAGGTCAAGGCTGCAGTGAGCCATGATTGCATCACTGTACTCCAGTGCGGGTGACAGAGTGAGACTCTGTCTCAAAATGAAACCAAAAAAAAAAAAACCCATACCTCAATATTACTGTTTTGATAATAGCTATCAGTGACACAAGCCCTCTTGCAGAACATTGAGTATATTCGTTTTTAAACAAGTCAGACGGGGCAGAAAACTATTTCCCTGAAAATGATAAAAATTTAGTTCTGCTGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGACCAGCATGGTGAAACCACGGCTTTACTAAAAATACAAAATTAGCTGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTTGGGAGGCCGAGGTAGGAGAATTGCTTGAAGCTGGGAGGTGGAGGTTGCAGTGAGCTGAGATCGCACCATTGCACTCCAGCCTGGGGAACAAGAACAAGACTCCGTCTCAAAAAAGAAAAAAGAACTTTAGTTCTACTACCCGATAATACATATAAAATCATTAATACACAACCAGTATTACCGTGCTTCTAATTTTTTACAG
Seq C2 exon
AAGCCATACGGGAGAGAGACTCTGTGAAGGTAAAGAAGGTAGTCAATGTGCAGAAAACTTCAGTCCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACTATCTGTGGAAAAGCCTTCATGCGTCTCTCATCCCTTACTAGACACATGAGGTCTCACACTGGATACGAGCTATTTGAGAAGCCATATAAATGTAAGGAGTGTGAGAAAGCCTTTAGTTATCTCAAATCCTTTCAAAGACATGAAAGGAGTCACACTGGAGAAAAACCCTATAAATGTAAACAATGTGGAAAAACCTTCATATATCACCAGCCCTTTCAAAGACATGAGCGGACTCACATTGGAGAAAAACCCTATGAATGTAAGCAATGTGGAAAAGCTCTTAGTTGTTCCAGTTCGCTTCGAGTTCATGAAAGGATTCACACTGGAGAAAAGCCCTATGAATGTAAACAATGTGGGAAAGCCTTCAGTTGTTCCAGTTCTATTCGAGTACACGAAAGAACTCACACTGGAGAGAAACCCTATGCATGTAAGGAATGTGGGAAAGCCTTCATTTCCCACACAAGTGTTCTAACACACATGATAACACACAACGGAGATAGACCTTATAAATGCAAAGAATGTGGAAAGGCATTCATTTTTCCCAGTTTTTTACGAGTACATGAAAGAATTCACACTGGAGAGAAACCCTATAAATGTAAACAATGTGGTAAAGCCTTCAGATGTTCCACCTCCATTCAAATTCATGAAAGAATTCATACTGGAGAGAAGCCCTATAAATGTAAAGAATGTGGGAAATCTTTCAGTGCACGCCCAGCCTTTCGAGTACACGTGAGAGTGCATACTGGAGAGAAACCCTATAAGTGTAAAGAATGTGGGAAAGCCTTTAGTAGAATCAGTTACTTTCGAATACATGAAAGGACTCACACTGGAGAGAAACCCTACGAATGTAAAAAATGTGGGAAAACTTTCAATTATCCTCTAGATTTGAAAATCCACAAGAGAAATCACACTGGAGAAAAACCCTATGAGTGTAAGGAATGTGCAAAAACCTTCATTTCTCTTGAGAACTTTCGAAGACACATGATCACCCACACTGGAGACGGACCTTATAAATGTAGGGACTGTGGGAAGGTGTTCATTTTTCCTAGTGCGTTACGAACACATGAAAGAACTCACACTGGAGAGAAACCCTATGAATGTAAACAATGTGGAAAAGCCTTTAGTTGTTCTAGTTACATTCGGATACATAAAAGAACTCACACTGGGGAGAAACCTTATGAATGTAAGGAATGCGGGAAGGCCTTTATTTATCCCACAAGCTTTCAAGGACACATGAGAATGCATACTGGAGAGAAACCCTATAAATGTAAAGAATGTGGGAAGGCCTTTAGTCTTCACAGTTCCTTTCAAAGACATACAAGAATTCACAATTATGAGAAACCTCTTGAATGTAAGCAATGTGGAAAAGCCTTCAGTGTGTCCACATCCTTAAAAAAACATATGAGAATGCACAATCGATAGAAACTCTATAAATGTGAGAAATAGGAGAAAGTTTTCAATTCTAACAGATGCTTTCAAAGTTGTGAAAATTCCCACTGAAGAGAGAAATCCTGTCAATGTAAGTAATATAGAAAGCGAGATACAAGATGATTCATGTATAGTCAGGTACCACATAATCATGTTTCAGTCAGCAATGGACCATATAGGTTGGTAGCCCCATAAGATTATATAACACCTAAAACATTTCTATCAACCGCAATTTAGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTGGTGTAAACGTGCTGCACTTTCAGTTGTATAAAAGTACAAGACAGCGGCCGGGGACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGCCAGGAGATCAAGACCATCCTGGCTAACACGGTAAAACCCCATCTCTACTAAAAATACAAACAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATAAACCCAGGAGGCCGAGCTGACAGTGAGCTGAGATCCGGCCAACAGAGCGAGACTCTGTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173875-ZNF791:NM_153358:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.4),PF0013017=C1_1=WD(100=11.5),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.1),PF079757=C1_4=WD(100=10.3),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.6),PF0013017=C1_1=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF097235=Zn-ribbon_8=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)