MmuINT0179888 @ mm10
Intron Retention
Gene
ENSMUSG00000074194 | Zfp791
Description
zinc finger protein 791 [Source:MGI Symbol;Acc:MGI:3648473]
Coordinates
chr8:85108553-85112270:-
Coord C1 exon
chr8:85112210-85112270
Coord A exon
chr8:85111043-85112209
Coord C2 exon
chr8:85108553-85111042
Length
1167 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCTTCTTTTTTTTTTCCAGAAG
3' ss Score
9.12
Exon sequences
Seq C1 exon
CGAGTGAATTGGAAGACCAGGATGTTTCAAATCAGTACAGAATCCAAGAGGAAAATGTAAG
Seq A exon
GTGAGCTTACACACTAAAGAAAACAGAATCTTACATTTTTAAATTAAGCAACCAAAAGAAACTCCTATATGGTTTTCTTTTTAAAAAAAATGTTCCCGCGTCGTCCCCACGGCGGCGCGGGGTCTCTCTCCCCCCGCCGGGCTTCGGGACCGGGGTGCGGTTCGGAGAGCCGTTCGTCTTGGGAAACGTGGTGCGGCCGGAAAGGGGGCCGCCCTCTCGCCTGTCACATTGAACGTGGAACCTGGCGCTAAACGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCCCTCGCTGGGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTAAAAAAAGAAAAAAGAAAAAAATGTTTAGCAAAGTATTTTAAATGATACATATTGAACATTTAAATATTATTACATAGTTGTCATGGTTAGGGTTGCCTGTGAAGAGACAAGCATTTAATTGTGGCTGGCTTACAGTTTCAGAGGTTTAGTCCATTATCATCATGGTGGGAAGCATGGCAGCATCCAGGCAGGCCTGGTCCTGGAGGAGCCAGGAATTCTACATTCTGATTCAAAGGCAGCTAGGAAGAGACTATCTTTCATTCAGGGCAGAGTCTGAGAGAACTCAGAGCCCACCTACACAGTGACACACTTCCTCAAACAAGGCCACATCTCCTAATAGTGCCACTTTCTATGGCCAAGCATTCAAACACATGAGTCTATGGGGGCCAAACCTATTCAAACCGCCACAGTGGTGCACATCGGTAATCACAACTTTGAAGACAAAGGCAGGAGGATCATAGTAAATTTAAGGCAGGAGGGGGGCTTTCTCCAGGCCCTGGATTAATGTTTTGAGACAGGGATCTGCTGTATAGCCCAAAACTCCTAACAGTCCTCCTGCCTCAGCTTTCCAAATGCTGGGATTACAGGCATGGGCTACCAGCCTAGCTTTTGCTTTTATTTTGAGATAGACCCTTGCTTTATAACATTAACTGCCCTCACATTTGTGATCCTCCTGCCTCAGCCTCCTACGTGTTAGTATTAGTGGTATGCCAGCATGCCATGGCTATAAAGATGTAATCCTGATGTGTATTAGTGAACATTAAATAATAATTAATATTGGGATAATAATATTAATAACGGGCTTCTTTTTTTTTTCCAG
Seq C2 exon
AAGTTATGTGATACAAAGACTCTATGAAAGTAAAGAAGTTATTGAGCATGGAGAAAGCTTCAGCCAGATTCCAAACACTGGTGCGGCCAAGATAACTTCTGGAGGAAAGCCGTATAGTTGTAGCGTGTGTGGAAAAGGCTTCATGCTTTGTTCATCCCTCACTAGGCATGTCAGAGCTCACCCTGGCCATGAACTTGCTGGGTTTAAGTGTGGAGAGAAGCGATTTAAATGTAAGGAATGTAGGGCCACTTTCAGTTACCTCAAATCCTTTCAGAGACATGAAAGGACCCACGCTGGAGAAAGCCCCTACAGGTGTAAACACTGCGGGAAGACCTTCATCTATTTCCAGCCCTTTCAAACACATGAACGGACACACATTGGAGAGCAACTCTATCAGTGTAAGCATTGTGGTAAAGGGCTTAGTTCTCCAGGTTCTCTTCGAATTCATCAAAGAATTCACACCGGGGAGAAGCCCTATGTGTGTGAGAAGTGTGGCAAAGCCTTCAGTTGTCCCAGTTCCATCCAAATCCACGAAAGAACCCACACCGGGGAGAAGCCCTATAAATGTAAAGAATGCGGGAAAGCCTTCATATCCCGCACAAGTGTCAAAACGCACATGGTGACACACAGCGGCGATGCAAACAAGCCTCATAAATGCGAGCATTGCGGGAAGGCGTTCCTTCGGCCATGTTTTCTGCGAGTGCATACGCGGATTCACACTGGAGAGAAGCCGTATGTCTGCAAGCAGTGTGGTAAGGCCTTCAGATGTTCCACTTCGATGCAGATCCATAAAAGGACTCACACCGGGGAGAAACCCTACAAGTGTAAGGAGTGCGGTAAAGCTTTCAGTGCCCATTCGGCGTTTCGAGTCCACAGGCGGGTGCACACTGGAGAGAAGCCTTATAAATGCCGAGACTGTGGGAAAGCCTTCATCTGCCTCACGTACTGCCGCGCGCATGAGCGGAAACACAGCGGAGAGAAGTCCTACGAATGCGATCAGTGCGGGAAAGCCTTCGTCTCTCTGGAAAACTTTCGACGACATGTCAAAACTCACGCTGAAGATACACCTTATAAATGTAAGGAGTGTGGAAAAGCTTTCGTTTTCCTCAGCGCCCTTCAAGCGCATGAGAGGATCCACACTGGGGAGAAGCCTTACGAATGTGAACAATGTGGCAAAACCTTTAGATGTTCAAGCTATGTTCAGGTACACAGGAGAATCCACACCGGGGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAAACCTTCATTTATTCTACGAGCTTTCGAGGGCACATGAGAATGCACACGGGAGAGAAACCCTACAAATGTAAGGGGTGTGAGAAAGCCTTCAGGCTCGGCAGTTCCCTTAAAAGACATGAGAGAACTCACAGCTGAAAGAAATGTGCTTAGTGTACGCATGCATGGGAGAACTTTTTGCTTTGTCCACATCCTTCAATAAACATGAAAATGCACAATAGACAACGAATGTGAGGAATGGGGGGGGGGGTTGAACATTTTCAATCTTAACACTTTGTTGTGAAATTATCCATTGTGGAGAAATCTCATGCTATTAGTTCATTAAGTAATACCAGAAACTAACTGCGGTGTAATAGGAAACTGACATCAAGTGGGCCATAAAATTCAAAATGTTGAGGAAACATAAGAGCTAAATATGTTCATCGGGGTTTAATTGTTTCTGATATATCTGCATGCTTTGGTTTGTTGCTGTAGCCCTGACTGGCCTGAAGTTCACTATGTAGACTAAACTGACCTCCAACTCAGAGATGTGTGTGTGTGTGTGTTTTAGAAGAAAGATTATTTTATAGTTCCAGAAGAATAATTGTCCATTGTAAAGTAACCTTTATTTGCCTGCTATCTCTTTGGCTTCTGTTTGCTATCCTAGGCCTAGTCCTGGAAGCTTCTAGCCTCTGTACAATCTAATCTAGGCTTAGAATGTTTCCAGCCTCTAAGACTGATAGGCTGATGAATAACTCACCCTTTCTTGTTTTTCCTGAACTCTGGCTGCCTGGTCAACTCAACTGTTCTGGCTCAAAACTCTCCAAGCTGACTGACTCAATCTTGCTTCTCTCAACTTCTCTGAATTGCTCTGCTTGGCCTCAAACTAACTCTAGCAGTCTTTTCTAATCTTCTGGCTCATTCTGTCTTCAACCTGTCTCTGTAAAACTCTTCTAGTAAACCTCTTCTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCCACTGTTTTGTCTTGAGTAGCCTCTCATCTCTGTTCTTGTAAGAGCTGGGCATAGGGTTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGATCCTGAGTCCAATTCTCAGTAACCACATGGTGGCTCACAGCCATCTGAAATTGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACACATATACATAAAATGAATAAATAATTCTTTTTAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074194:ENSMUST00000211109:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=5.4),PF046067=Ogr_Delta=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGACCAGGATGTTTCAA
R:
GCGTGGGTCCTTTCATGTCTC
Band lengths:
346-1513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types