HsaINT0188206 @ hg19
Intron Retention
Gene
ENSG00000242852 | ZNF709
Description
zinc finger protein 709 [Source:HGNC Symbol;Acc:20629]
Coordinates
chr19:12571998-12577333:-
Coord C1 exon
chr19:12577276-12577333
Coord A exon
chr19:12576548-12577275
Coord C2 exon
chr19:12571998-12576547
Length
728 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTTTTGTTTTTTTCTCACAGAAG
3' ss Score
9.27
Exon sequences
Seq C1 exon
GGGAAAACTGGGAGGAGAAGAACATTGAAGATCACAAAAATCAGGGGAGAAAGCTAAG
Seq A exon
GTGAGTTGTACTTACAAAAGAAAATACTGTCTTATGAGAGAATCTTAGCATGCCATTAGGTTTAAAAAATGAATAATTGAAACAAATAAGCCCCATTTCATATTTATTTATTTTTTGAAAATTTTTGCCAAGAACGTTTTCTTAAAAATGGTACAGATGTTCAGTATTTGAAAAATATTTCACCTGGAAACAATATTAAGAAACTCTATATTATGAATTTTGGCCAGGCATGGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCCAAGGTGGGCAGATCACCTGAGGTGTGGAGGTTGAGGCCAGCCTGGCCAACATGGCAAAACCCTGCCTCTACTAAAAATGCAAAAATTAGCCAGGTGTGGTGGTGGGTACCTGTAATCCCAGCTACTCATGAAGCTGAGGCAGGAGAACTGCTTGAACCCAGGAGACGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTGCAGCCTGGGCAACAGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAAGAAATAAACTCTATGTGATGAATTTTATTGTTTTGATAATAGCTCTGGTCAAGTACTCTTCCTGAGCATTCATGACATACACTTTCCCTGAAAATGGCAAAAGTGTAATTCTACTACCTACTAATGATTGTGAAATAATCAATAATTATAAAATTATTAATTTTAAAAAGCCACTAATTGTGCGTTTTGTTTTGTTTTTTTCTCACAG
Seq C2 exon
AAGTCATATGGTAGAGAGGCTCTGTGAAAGGAAAGAAGGTAGTCAGTTTGGAGAAACCATCAGTCAGACTCCAAATCCTAAACCAAACAAGAAAACTTTTACTAGAGTAAAACCATATGAATGTAGTGTGTGTGGAAAGGACTATATGTGTCATTCATCTCTTAATAGGCACATGAGATCTCATACTGAACATAGATCATATGAATATCACAAATATGGAGAGAAATCATATGAATGTAAGGAATGTGGGAAAAGATTCAGCTTTCGAAGTTCATTTCGAATACATGAAAGAACTCACACTGGAGAGAAACCCTATAAATGTAAACAGTGTGGTAAGGCTTTCAGTTGGCCCAGTTCCTTTCAAATACATGAAAGAACTCATACTGGAGAGAAACCTTATGAATGTAAGGAATGTGGGAAGGCCTTCATTTATCACACAACCTTTCGAGGACACATGAGAATGCACACAGGGGAGAAACCCTATAAATGTAAAGAATGCGGGAAAACGTTCAGTCATCCCAGTTCTTTTCGAAATCATGAAAGAACTCACTCTGGAGAGAAACCCTATGAATGTAAACAATGTGGAAAAGCTTTCAGATATTACCAAACTTTTCAAATACATGAAAGGACTCACACTGGGGAAAAACCCTATCAGTGTAAGCAATGTGGTAAAGCTCTTAGTTGTCCCACATCCTTTCGAAGTCATGAAAGGATTCACACTGGAGAAAAACCCTATAAATGTAAAAAATGTGGGAAAGCCTTCAGTTTTCCTAGTTCCTTTAGAAAACATGAAAGAATTCATACAGGAGAGAAACCCTATGATTGTAAGGAATGTGGGAAAGCATTCATTTCTCTTCCAAGCTATCGAAGACATATGATAATGCACACTGGAAATGGACCTTATAAATGCAAGGAATGTGGGAAAGCCTTTGATTGTCCTAGTTCTTTTCAAATCCATGAACGAACTCACACTGGAGAGAAACCCTATGAATGTAAACAGTGTGGTAAAGCCTTCAGTTGTTCCAGTTCCTTTCGAATGCATGAAAGAACTCACACTGGAGAGAAACCCCATGAATGTAAACAATGTGGTAAAGCCTTCAGTTGTTCCAGTTCTGTTCGAATACATGAAAGGACTCACACTGGAGAGAAACCCTATGAATGTAAACAGTGTGGTAAAGCCTTCAGTTGTTCCAGTTCCTTTCGAATGCATGAAAGAATTCACACTGGAGAGAAACCCTATGAATGTAAACAGTGTGGTAAAGCCTTTAGTTTTTCTAGTTCCTTTCGGATGCATGAAAGGACTCACACTGGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTCAGTTGTTCCAGTTCCTTTCGAATGCATGAAAGGACTCACACTGGGGAGAAACCCTATGAATGTAAACAGTGTGGTAAGGCGTTTAGTTGTTCCAGTTCCATTCGAATACATGAAAGGACTCACACTGGAGAGAAACCTTATGAGTGTAAACAATGTGGTAAGGCCTTCAGTTGTTCTAGTTCTGTTCGAATGCATGAAAGGACTCACACTGGAGTGAAACCCTATGAATGTAAACAATGTGACAAAGCCTTCAGTTGCTCACGTTCCTTTCGAATCCATGAACGAACTCACACTGGAGAGAAACCCTATGCATGTCAACAATGTGGTAAAGCCTTCAAGTGTTCCCGTTCCTTTCGAATACATGAAAGAGTTCATAGTGGAGAGTAACCCTATGTATATAAGCAATATGGCAAAGTTTTCAGTTGTCCTATTTCCTTTTTTTTTTTTTTTTTTTTTGAGTTGAATTCTCACTCTGTTGCCCTGGCTGGAGTGCAGTAGAGTGATCTCAGCTCACTGCAACCTCTGTCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCTGAGTAGCTGGGACAACAGGTGTGAACGACCATGCCCACTTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGACGATCCACCTGCCTTGGCCTCCCAAAGTGTTGGATTACAGGTGTGAGCCACCACACCCGGCCCCCATTTCCTTTTGAAGACATGAAATTATTCATATTTCAGAGAAACCCTATAAGACATGGGAATACCTTCAGTTATTTACATGTGAATATGAGGAAGCATTCATACTGGACAGGAAACCCTGCGAATGTAGGCAGTGTGGGAAAACCTTCAATGGTCATATGACCTTTTAAGGACCATGAGAAGGCATATGAAGTGTAAAGAATTTTCATATGCCCTATAAATGTAAAGAATTTATAACCTTAAAAATGTAAAGAATGTGGAAAACCCTATAAATGTAAAAAATGTAGAAAAACCTTTATTTGTCTTAGTTTACTTGGAAACCATGAACAAACTCACACTGGAAAGCGACTTCTTAAATATAGACATTGTGAGAAAGCCTTCAGTTGGCCCACATACTAATATGTGAGAATGCAGACTGGATAGAAATCCTATAAAAGTGAGATATAGCAATGTTTTCCATTTTAACAAATGCTCATGTGATACTCCCTTATGTGTGAAACTTCAATCTCATGTTGAAACTCCCACTAGGGAGGTACTGTATAAATGTAGATAATATGGGAAAGCCTGATGCAAATTAATTCATGTATATTGTTCTAGAAAATTCACAACATGTCAGAAATGTGATAAAACATATTATCAGTTACTGATTCTTAAAATGGATCTCTGAATTATGGATTTCTATTACTTTCACAAAAGAACACTGAGATGAGATAATTCTGTAAGCTCTTATACAGTTGTACACAAGTTGAATTGATAGTATTTTTTCATTAAATCAGTTTCTGAAATTTTGTCTTTCCATATTGAAGTCTGTTAGATTCATGAGTGAATTGAAGTGTATTTATAATAAGCTAGCAGTTTTGATTTTTATGTATTTTTTAGTTGTGCTGTAATGGGCCATCAAAAAATGACAATTTGGTAATTTTTAGGATTTCCTACTGGCCTTATGTGGCAGGTACTAGATATCATTATATGTATTTCATCTTTCTGACCAAAAGAGGCTTTTTTAGAGGAAGACAGAGTACCCTTTTTTCTATTTTTTATGCTAAAAAATAATCATAATAAATTTTTGAGTCTGCAAAGTTTATCATACAGTATACTCTCTCATTGGAATTATTATTTTCATCTTCTGTTTGCTGTTTGTAATTCCTTCTGGCTGTGATTTGAATAATAGACTTTGTATTAATAAGAGAGATCTGAGATAGAACCATATAACCTATAGCTGGAAATGGCTGTCCTGGATTGTGTTAACATGGGTTATGTTGTGACCTATGTTTTCTATAATCTAACCTTTTATGGCTCCACGGTATAATTCACCAATAGCCTACTTGCAGGAGATATGGAAGGCAGAAGTGAAGAAAGCATTAGTCAGGTTTTATAGCCACCATATGTGGAGACAGATGGATGCATAGGAGCTTCAGGGACACCTGCTTCCACCACATTGTCCTGATCCTTTGCTCTGCCAATTGAGAGTATTCTTAGAACCACCACTAACTGCTTGACTGCCATATTTTCCTTCCTTCCTTCCTTCTTTCTTTCCCTTTCCCTTTCTTTTCTTTCTTTACTTTCTTTTTCCGAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTACGATCTTGGCTCACTGCAACCTCTGCCTTCTGGGTTCAAGCAATTGTCCTGCCCCAGCCTCCCAAGTAGCTGGGATTATAGGTGCCCACCACCAAGCCCAGCTAAATTTTTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCATGATCTGCCCACCTTGGCCTTCCAAAGTGCTGAGATTACAGGCGTGAGCCACTGTGCATGGCCCCAGCTGCCATATTTTCAAAGATGTAGTTTTCCACAAATTGTCTTCAAAAGTTCTACTCAAAGATGCACTGCAGTTTGGATTTTCCTAGAAACTCTAATGTGTCCACCAGGCAACCATTTAGACTCTTAAGGTTGGGAATATTCTCTGATGCTCTGACTCACCTCATCTCTAGGTTGAATTTATCCAAGGTATTATTTATGTAATAAACACCATGTTTTGTTAACAGTACCAGTGACTATGTGTTTCTGATTCCACCGTGACAACTACAGTGGTGCAGTCAAAAAGAACTACATGGGTGTCTGCTTCTCCACTGCACTGTGCAGGGAATGCACTTACCCAGTCCTACAGTGTAAGAATAAGCACCTTCCTAATATCAAGCAGATTGTCGGTGTTTCCTATTACAGTTGAATGTCATCTCTCAGTACATTTTCAATTTTGTTTCATTATATGTGATTAAAAACCATGTGTATGTTTTTGTTGAACAAAAGCTTCTGTAGATGTTTCTTAGAAATATTTTATTAACTTTTCAAATAACTTGTATGCTATCACTTGTCTATTTAATTTTCTGCAAGGATATATTAAAATATTCCATTGCAATTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000242852-ZNF709:NM_152601:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACAAAAATCAGGGGAGAAAGCT
R:
AGGGTTTCTCTCCAGTGTGAGT
Band lengths:
342-1070
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)