RnoINT0168724 @ rn6
Intron Retention
Gene
ENSRNOG00000050600 | Zfp872
Description
zinc finger protein 872 [Source:MGI Symbol;Acc:MGI:3588272]
Coordinates
chr8:23193492-23195928:+
Coord C1 exon
chr8:23193492-23193552
Coord A exon
chr8:23193553-23195612
Coord C2 exon
chr8:23195613-23195928
Length
2060 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TATGATTTTCATTCTCACAGCGC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGGGAAATTGGGAAAACCAGAGCACTGGGGATCAGTGTAAAACCCAGGAAAGAGACATAAG
Seq A exon
GTAAGTCATGCTCATCGAAGAAGCTGGAGTTCCACGGTGGAGTCTTAGTATGTCATTGGAAACAACAGCAAAACTCCAGCTTCGTGTTTGTTTGTTTATTTATTTATTTATTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCGTGTTTATTTTTATATATTTAAACTTATTATATTATTTTATCATATAAAATATGAATATTTATATTTTGAGTAAAATATATATTACATCTTGCACTTGAAATTATTTAATTTCAACCCAGGCTTTCTTCTGGGCCTTTGAGCCTGTAGTCCCCAGATGAAAGACACACACAGACTTTATATTTACAATAAGCCTTAAACAGCACAAGAGCTGGGCGGATACCACCCTCTGTGCTATTAGAATATACTTTCCTATCAGTAACCCCAAGTCATTTATACTATGTGTCACCTGGGCTGCTCTTAACTCCAGTTGGCCAGCCTGCAGGGCCATGTTTTTATGGCTCACTTAACCCATGGCGGCTTCTCCCTCCTCCTCCTGCTCCTTCTTCTCAGGTCCCAAGCCCAGGAAACTTAAACCCCACCTATGTCTCTCCTGCCCAGCTATTGGCAGTTGGTGTGCTCATTACCAATCAGAAATAACTGGGGGCAAGGTCTACATGGGACCTCTTTCATCTCTGGAACAACCAGATTCTGGGGGCCTGCACTTAGCCTTACAATAAATAACAAAGGACCAAACCTCAACACCTATTTTAGAAAAATTCCATGATTTTTTTTTTTTTAAGATTTTATCTTTACTGGAGGGTTGACTGAGTGGCTAAAGGTACTTGTTGCTTTTGTGATGACCTGGGTACAGTTCTCAGCACTGAAATCAAGTGATTCATAACCTTTAGTAATTTCAGCTCCAGGAGATATGATGGCCCCTTCTGGCTTCCATGGGTACTGCACCCACATTGTACACATATAGACAAGCAGGTGCATACACACAAATAGTTAAAAATGTAAATATTTATTTTAAATTATTTGTGTGTGTATGGGAGTGCCAGAAAAGGATGTTGGGTTACCCAGAGTTACAAACCAGTGTCGGTGAGAACCAAACTCGGGTGCTCTGGAGGAACAGCAAGTGGCCTTAACCACAGAGCCATCTCTCCAGCCTCTCTTCCGTGTTTTTATGTTTTTTTTCTTAACTTATATGTCTCTGTGTGGGCATGTACACACAAGTGCAGGTTCCCACAGAAACCAGAGAGCATCAAATTCCTTGGTGAGCCAGAGTTAAAGGTGATTATGTGCACCACACGTGGATGCTGGAAGCCAAACTCAGGTCCTCTGTGAGAGCAGCCAGTGAGTGCTCTTTTTTCATATATGCTTTTTTCTTCACTATTGTTTTTCTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTGAGACAAGGTTTCTCTCTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGATTGGGCTGACCTTGAACTCACTGAAATCCACCTGTCTCTGCCACCTGAGTGCTGGGATTAAAGGTGTGCACCACAATCACCTAGATCACCAAGAACTTTTCAAAATGACACAGCTGTGCAGTATTCAAAGAACAGCTCACTTTGAAACAGTATTAAGAAACTACATTTGAAAATAGAAAAAAAAGAAACCACACATTATGAATATCTCTTAAATTTTTTAAATGTACTTATTTTATTTTATGTGTATGAATGTTTTGCGTCATTGCCTAGCACATGTGGAGGTTAGAAGGGGTGGATCCTTTAGATCTGAATTCACAGACGGTTGTGAGCCAGGAGCAGAATCTCAGTCATCTGCAAGAGCTAGTGCTCAACTGCTGAGTCACTCTCCAGCCCCAGTATCTCTGTTTTCATAATATCGATGCTTAAACTCTTTCAGAGTATTCATTATATACATGCTCTTTGAAAGTAGGGAAAGTATAACATACGTTTATGACATCCTTACTGATTGTAAAATTGTTAATAGAGAAACCATTGATCATATGATTTTCATTCTCACAG
Seq C2 exon
CGCTCACATAGAACAGAGACCACGTGAATGGGAAAGTTCACCCAGGGAAATCGTCACCCAGGTTCCAGTTCTTAAACAGAAGAATGTTCTCCCCGGAGTAAAACCCTACGAATGCAGAGTATGCGGGAAAGTTTACTCATGTTTGTCCTCTCTTAAAAGGCACACTCAGTGTCATAGCAAGCATGCATGGTGTGGGAGTCACATATTCGGAGGAACATCATACCAGTGTAAGGACTGTGGGAAAACATTCATTTTTCAAAGTTCATTTCGAATACACGAGAGGACCCACACTGGAGAGAAACCCTATAAATGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050600:ENSRNOT00000071703:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(65.4=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]