MmuINT0179995 @ mm9
Intron Retention
Gene
ENSMUSG00000054519 | Zfp867
Description
zinc finger protein 867 [Source:MGI Symbol;Acc:MGI:2681848]
Coordinates
chr11:59274699-59278574:-
Coord C1 exon
chr11:59278514-59278574
Coord A exon
chr11:59277789-59278513
Coord C2 exon
chr11:59274699-59277788
Length
725 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
TGTTGTTCATTCCTTAATAGGCA
3' ss Score
8.3
Exon sequences
Seq C1 exon
AGAAAGGGTGGGAAGACCAGAACGTTGAGGATGAGGACAAAAATCCTCAGACAAATCTAAG
Seq A exon
GTAATCTGAATTCATAAAAGGTGTGATGTTTCTAGAGGGAAGCGTAGCATGTCTGTGAACTGTGGTAAACAAATGAAACAGATGAGCATACTTTAAACATTGATTACTAGCTTATTTGTACCCACCCCCAGTTTAACAGTAGTTTCTTTTTTCTTTCTCTTTTTTAAAGATTTATTTCTTTATTACATGTAAGTGCACTGTAGCTGTCTTCAGACACCCCAGGAGAGGGTGTCAGATCTCATTATGGGTGTTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACACAGGACCTTCGGAAGAGCACTCAGTGCTCTTACCCGCTGAGCCATCTTGCCCCAGTGTTTTCTTTTTAAGTTAGTTGATTTTCATACAGTACTAAGAAACTATGTGAATGCCACTGTTTTGATAATAGATTTGGGGAAGCCATGATTCAGAAACATGATTCCATTTACTTTCTTATAATTAAGACGTGCCAAGACACTTAGGCTTTCTCTGAAATTGGTTATAATGTAAGTCCAAGACATTAATGAATAGAAGTTCAGCAGTAAACCAACCTTCACTATGTGCTTACCTTTTGTACAGAAGTCATAGTCATATGGTAGATTCTGTCCAAGTAAAGATCATAAAAATCAACGTGGGTAAAGTTTCAGTGAGATTACAAATCTTAATCTGAAAAAAGAATGTGCTTAGAAAAACCTTCATATGTTGTTCATTCCTTAATAG
Seq C2 exon
GCACATCATAGCCAACTCTGGATACAACCTATATGAAAGTGAAGAATCCTCTGAGAAGCCATATAAATGTACACAGTATAGGAGCTCTTTCATTTCTCTTATGAGTATTCAAAGACATATGATAACGGACACTGGAAGTAAGCCTTACAAGTGTATGCTCTGTGGGAAAGCCTTTCATTTCCCCAGTGAGTTCAGAATCCATTTAAGAACTCACACTGGGGAGAAGCCCTATGAGTGTAAAGAGTGTGGAAAGGCCTTCAGCCATTCCAGCTCCTTTCGAAAACACGAGAGAACTCACACCGGAGAGAGGCCCTACGTATGCAAACAGTGTGGGAAGGCCTTCAATTGTTCTGGTTCCATCAGAAAACATGAGAGAACTCACACTGGGGAGAAGCCTTATTCGTGTAAACAGTGTGGGAAGGCCTTCAACTGTCCCAGTTATCTCCAAATTCATGAAAGAAGCCACACTGGAGAGAAGCCCTATGAGTGTAAGCAGTGTGGGAAGACCTTCAGTTGTTCTAGTTCCCTTCGAAAACACGAGAGAACTCACACCGGAGAGAAGCCCTATGAATGCAAACAATGCGGGAAGGCCTTTAGTTGTTCCAGTTCCTTTCGAAAGCATGAGCGGACTCATACTGGGGAGAAGCCCTATGAGTGCAAGCAGTGTGGTAAGGCCTTCTTTTCTCTCACAAGTGTTCGAACGCACATGATAAAGCACACTGGAAATGGGCCTTTTAAATGCAATGTATGTGAAGAAGTGTTTCCCTTTTCCAGTGTATTTAGAAGACATCAGTCATCTCATGCTGGAGAGAAGCAGCCCTATGGATGTAAACAGTGCAATAAATGGTTTAGTTCCAACACCTCACTTCAGAATCACAGAAGAAGTCACACTGGGGAAGAGCCCTACGCCTATAAACAGTGTGGGAAAGCTTTCAGTTGTCCCAGTTACATTCGAAAGCATGAACGGGCTCATAGTGGGGAGAAACCCTATCCATGCAAGCAGTGTGGTAAGTGCTTCAGTGCTTCCAGCTCTCTGCAAACACACGAAAGGATTCATGCTGGAGAAAAGCCCTATAAACGTGAGCAAGGTGCTAGAGCATTCAGTTGCTCCACTTCCCTTAGGAGACACGAACAGGCTCATAGTGGGGAGAATGCCTATGAATACAGTGTGGGAAAGCCTTTGCTTCCAGTTAGAATTGATTACTAACTGTCTTGAAGTTATTCATAACAGTCTTATGAATGTAAATTCTGGCAAATCCTTAGTTTCTCTAACTAAGATTTTTGTTTTTGTTTAAACAAAAATGACAAAGCACACTGGAAATGACCTTTTTAATGTGAATATGTGAAAAAAAGCCTTTCACATTTCACAGCCCCAGCATATTTAGAGCACATCAAATAAACTCTCATGCAGGAGAGAAACAGTGTGAATGCAGACAATGCGGTAAATCCTTCACTTCTTCCAGGTATCCTCAGAACCATAAAGAATTCATGTTGGAGAGTATCCCTATTAATGCAAGCACTGGAGAGCCACTGACTACAGTTGCCTTGAAAACATGAGTAAACTTGTACGGGAGACATGTCCTTTGAGTACAAATAAATATGGTAAATGTCACCGTTTCCATTTGCCCTCAAAGAAACTACTCCTTGGACAGCATATCATCAGAGTGACTGTAAAGACTATGAAAAACCAGTGCTTTCCTAATCTCCATAAAGGACACAAAAAAGGTTCACACTGAACAGTAGGAAGCCCACGTTTGTGAGAAAAGAGGTAAGGCTTCAGATGCCACAGCTGTCTCAGGCTGTGTGAAAGAACACATACTTAGCTAAAACACTAGGACTAGGAACATGGGGGAAGCACTCAGATTCTCAGTGTTCCTCAAAGGCATAAAAAGGACCAGAGGGGAAAACACCTGTAGGCCTAAGTAATGTGGGCAGGCTTCAATTTTACACTTCTTTCTGAGAAGCAAGGAAACACTCTGCAGAAATTCTGAGCTTAAGAACTGTCACAAGACCTTCAGTTTCCCATCTTCATTCGAAGTGATGCTAGAACTCATCTAGAAAAAGACTATTGGGTACAGGAAGTACTGAGCTCATGTCTCTTTGAAAGGTACATGGTACACTGGAGATGGCTGTGCAATGCATTGACTTTACAATGCGAAAACATTGTTTCTCTGGGCTAAAGCATGGAATGTGTCTTTTTATATTAGATACAATTTTGTAGTATTTTATTGAAACTTTTTGCAAACTATTCAAAGAGATTTATGTATCTTGGTATAGTATATAATATAGTATTATTTAGTACATACAGTGTATGCATGTATATACATGTATCTGTAGGATACAGTATAGTTTGTATATGAGTAGTATATATTATATAACTAGTTTATATGGTATGTAACTAACCACTATTTTACTATAGTATTATACTACATGGCTATGCTATTGGAGTTTTATCAGTGTGTAGAATAAAGTGTTTCAGTTACCCACCCCAGTCCCTGTCTGTAGCTATTTCTTGCTCCAGGAGCATGGCTACCAGGATCCCCAATATTCAGCATCAACTGTTTTCACCAGGTGGAAAACAGGGATGGCTTCCTTACCAACCCATGGACTTGGGACTGCAGCTGCTATCAAAATCCTCAGCATCAACTGGATGTGGTGGTATACCTTTAATCCCCCAAATAGAGAGGTAGAGACAGGAAAGAAAGGGAAGAGAAGGAGGGAGAGAGGAAGAAAGCAAGCAAGCAAACAAAACCAACCAAAGGAAACAACTCCACAGAATCTTCAGCATTACCCATTCTCGTCCCTGAGGACGATGGAAGGTCCTTCTGCAGCCCTGGGAATGTGGCCATCAAACTTTAGAGCAGGTCTCCAGAAAGTTATCAATAACAATCTGTAGACATCCTTTTCACATCCTGTACGCTGTACATACCAAAGTTACAAGGCCTAGCACAATCTTTACTCAAGGGATATAAGGTCTCTCATTTTACAACTGCAAGAGATTGACACCATGAATCCAAATGTTACCTTTAAATGTTCCATAATTCTTAGGGGAGATTTTCAGAGACAAAGACTTGAGATTATGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054519-Zfp867:NM_178417:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGACCAGAACGTTGAGG
R:
TCTCCGGTGTGAGTTCTCTCG
Band lengths:
358-1083
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: