RnoINT0168715 @ rn6
Intron Retention
Gene
ENSRNOG00000022431 | Zfp867
Description
zinc finger protein 867 [Source:RGD Symbol;Acc:1642427]
Coordinates
chr10:45810406-45812131:-
Coord C1 exon
chr10:45812071-45812131
Coord A exon
chr10:45811595-45812070
Coord C2 exon
chr10:45810406-45811594
Length
476 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
TGTTGTTCATTCCTTAATAGGCA
3' ss Score
8.3
Exon sequences
Seq C1 exon
AGAAAGGGTGGGAAGACCAAAACATTGAGGATGAGGACAAAAGTCCTGAGACTAATCTAAG
Seq A exon
GTAATCTGAATTCATAAACGGTAAGATACTCCTTGAGGGATTTAGCATGTCTGTGAGCTTTGGTAAACATACCAAACAGATAAGCACAGCTGTAACATTGGTTACTAGATTATTTGTCCCACCCCCAGGTCAATGATGTTTTGATTTTTTGGGAATCCATGTTTCAGAAAGATGATTTCATCTACTTTCTAATAATTAAGACATGCCAAGACACTTGGACTTTCTCTTAAATTAGTTATATTGTAAGTCTAAGACATTACTGAATAGAAATTCAGCAACCTTTACGATGTGCTTGCCTTTTGTACAGAAGTCCTATGGTAGATTCTGTAAAAGTAAAGATCATAAAAATCAATGTGGATAAACTTTCAGTGAGATTACAAATCTTAATCTTAAAAAAAAAAGTACTTAGTATAGGAAAACCATGGGAAATGTGACTTGTCTAGAAAAATCTTCATATGTTGTTCATTCCTTAATAG
Seq C2 exon
GCACATCATAGCCAACTCTGGATGCAACCTATATGAAAGTGAAGAACACTCTGAGAAGCCATATAAATTTACACAGTATAGGAACTCTTTCATTTCTCTTATGAGTATTCAAAGACACATGATAATGGACACTGGGAGTAAGCCTTATAAGTGTATGCTATGTGGGAAAGCCTTTCATTTCCCCAGTGAGTTCAGAATCCATTTAAGAACTCACACAGGAGAGAAGCCCTATGAGTGTAAACAGTGTGGGAAAGCCTTTAGCCATTCCAGCTCCTTCCGAAAGCATGAGAGAACTCACACCGGAGAGAGGCCCTACGTGTGTAAACAGTGTGGGAAAGCCTTTAACTGTTCTGGTTCCATCCGAAAACATGAAAGAACTCATACTGGGGAGAAGCCTTATGAATGTAAACAGTGTGGGAAAGCCTTCAACTGTCCCAGTTATCTTCAAATTCATGAAAGAAGCCACACTGGAGAGAAGCCCTATGAATGTAAACAGTGTGGGAAAACATTCAGTTGTTCCAGTTCCCTAAGAAAACATGAGAGAACTCACACTGGAGAGAAGCCCTATGAATGTAAACAGTGTGGGAAAGCCTTTAGTTGTTCCAGTTCCTTTCGAAAGCATGAACGGACTCACACTGGGGAGAGGCCCTATGAATGCAAACAGTGTGGCAAGGCCTTCTTTTCTCTTACAAGTGTTCGAACACACATGATAAAGCACACTGGAAATGGACCTTTTAAATGCAGTGTATGTGAAGAAGTGTTTCCCTTTTCCAGTGTATTTAGAAGACATCAAACATCTCATGCTGGAGAGAAGCTCTATGAATGTAAACAATGCAATAAATGGTTTAGTTCCTCCACTTCACTTCATAATCATGAAAGAAGTCATAATGGGGAAAAGCCCTATACCTGTAAACCACGTGGTAAAGCTTTCATTCGAAAACATGAACGAGCTCATGCTGGGGGAAAATCCTATCCATGCAAACAGTGTGGTGAGTGGTTCAGTGCTTCCAGTTCTCTTCAAATGCACGGCAGAATTCAGACCGGAGAAAAGCCCCATAAATGTGAACAAGGTGCTAGAGCCCTCAGTTGCTCCACTTGCATGAGGAAACACGAACAGACTCAGAGTGGGGGGAAAGCCTATGACTATGGTGTGGAAAAGCCTTTGCTTCCAGTTAGAATTGACTACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022431:ENSRNOT00000038951:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAACATTGAGGATGAGGACA
R:
CCTCTCTCCGGTGTGAGTTCT
Band lengths:
356-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]