HsaINT0188206 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:12461184-12466519:-
Coord C1 exon
chr19:12466462-12466519
Coord A exon
chr19:12465734-12466461
Coord C2 exon
chr19:12461184-12465733
Length
728 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTTTTGTTTTTTTCTCACAGAAG
3' ss Score
9.27
Exon sequences
Seq C1 exon
GGGAAAACTGGGAGGAGAAGAACATTGAAGATCACAAAAATCAGGGGAGAAAGCTAAG
Seq A exon
GTGAGTTGTACTTACAAAAGAAAATACTGTCTTATGAGAGAATCTTAGCATGCCATTAGGTTTAAAAAATGAATAATTGAAACAAATAAGCCCCATTTCATATTTATTTATTTTTTGAAAATTTTTGCCAAGAACGTTTTCTTAAAAATGGTACAGATGTTCAGTATTTGAAAAATATTTCACCTGGAAACAATATTAAGAAACTCTATATTATGAATTTTGGCCAGGCATGGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCCAAGGTGGGCAGATCACCTGAGGTGTGGAGGTTGAGGCCAGCCTGGCCAACATGGCAAAACCCTGCCTCTACTAAAAATGCAAAAATTAGCCAGGTGTGGTGGTGGGTACCTGTAATCCCAGCTACTCATGAAGCTGAGGCAGGAGAACTGCTTGAACCCAGGAGACGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTGCAGCCTGGGCAACAGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAAGAAATAAACTCTATGTGATGAATTTTATTGTTTTGATAATAGCTCTGGTCAAGTACTCTTCCTGAGCATTCATGACATACACTTTCCCTGAAAATGGCAAAAGTGTAATTCTACTACCTACTAATGATTGTGAAATAATCAATAATTATAAAATTATTAATTTTAAAAAGCCACTAATTGTGCGTTTTGTTTTGTTTTTTTCTCACAG
Seq C2 exon
AAGTCATATGGTAGAGAGGCTCTGTGAAAGGAAAGAAGGTAGTCAGTTTGGAGAAACCATCAGTCAGACTCCAAATCCTAAACCAAACAAGAAAACTTTTACTAGAGTAAAACCATATGAATGTAGTGTGTGTGGAAAGGACTATATGTGTCATTCATCTCTTAATAGGCACATGAGATCTCATACTGAACATAGATCATATGAATATCACAAATATGGAGAGAAATCATATGAATGTAAGGAATGTGGGAAAAGATTCAGCTTTCGAAGTTCATTTCGAATACATGAAAGAACTCACACTGGAGAGAAACCCTATAAATGTAAACAGTGTGGTAAGGCTTTCAGTTGGCCCAGTTCCTTTCAAATACATGAAAGAACTCATACTGGAGAGAAACCTTATGAATGTAAGGAATGTGGGAAGGCCTTCATTTATCACACAACCTTTCGAGGACACATGAGAATGCACACAGGGGAGAAACCCTATAAATGTAAAGAATGCGGGAAAACGTTCAGTCATCCCAGTTCTTTTCGAAATCATGAAAGAACTCACTCTGGAGAGAAACCCTATGAATGTAAACAATGTGGAAAAGCTTTCAGATATTACCAAACTTTTCAAATACATGAAAGGACTCACACTGGGGAAAAACCCTATCAGTGTAAGCAATGTGGTAAAGCTCTTAGTTGTCCCACATCCTTTCGAAGTCATGAAAGGATTCACACTGGAGAAAAACCCTATAAATGTAAAAAATGTGGGAAAGCCTTCAGTTTTCCTAGTTCCTTTAGAAAACATGAAAGAATTCATACAGGAGAGAAACCCTATGATTGTAAGGAATGTGGGAAAGCATTCATTTCTCTTCCAAGCTATCGAAGACATATGATAATGCACACTGGAAATGGACCTTATAAATGCAAGGAATGTGGGAAAGCCTTTGATTGTCCTAGTTCTTTTCAAATCCATGAACGAACTCACACTGGAGAGAAACCCTATGAATGTAAACAGTGTGGTAAAGCCTTCAGTTGTTCCAGTTCCTTTCGAATGCATGAAAGAACTCACACTGGAGAGAAACCCCATGAATGTAAACAATGTGGTAAAGCCTTCAGTTGTTCCAGTTCTGTTCGAATACATGAAAGGACTCACACTGGAGAGAAACCCTATGAATGTAAACAGTGTGGTAAAGCCTTCAGTTGTTCCAGTTCCTTTCGAATGCATGAAAGAATTCACACTGGAGAGAAACCCTATGAATGTAAACAGTGTGGTAAAGCCTTTAGTTTTTCTAGTTCCTTTCGGATGCATGAAAGGACTCACACTGGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTCAGTTGTTCCAGTTCCTTTCGAATGCATGAAAGGACTCACACTGGGGAGAAACCCTATGAATGTAAACAGTGTGGTAAGGCGTTTAGTTGTTCCAGTTCCATTCGAATACATGAAAGGACTCACACTGGAGAGAAACCTTATGAGTGTAAACAATGTGGTAAGGCCTTCAGTTGTTCTAGTTCTGTTCGAATGCATGAAAGGACTCACACTGGAGTGAAACCCTATGAATGTAAACAATGTGACAAAGCCTTCAGTTGCTCACGTTCCTTTCGAATCCATGAACGAACTCACACTGGAGAGAAACCCTATGCATGTCAACAATGTGGTAAAGCCTTCAAGTGTTCCCGTTCCTTTCGAATACATGAAAGAGTTCATAGTGGAGAGTAACCCTATGTATATAAGCAATATGGCAAAGTTTTCAGTTGTCCTATTTCCTTTTTTTTTTTTTTTTTTTTTGAGTTGAATTCTCACTCTGTTGCCCTGGCTGGAGTGCAGTAGAGTGATCTCAGCTCACTGCAACCTCTGTCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCTGAGTAGCTGGGACAACAGGTGTGAACGACCATGCCCACTTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGACGATCCACCTGCCTTGGCCTCCCAAAGTGTTGGATTACAGGTGTGAGCCACCACACCCGGCCCCCATTTCCTTTTGAAGACATGAAATTATTCATATTTCAGAGAAACCCTATAAGACATGGGAATACCTTCAGTTATTTACATGTGAATATGAGGAAGCATTCATACTGGACAGGAAACCCTGCGAATGTAGGCAGTGTGGGAAAACCTTCAATGGTCATATGACCTTTTAAGGACCATGAGAAGGCATATGAAGTGTAAAGAATTTTCATATGCCCTATAAATGTAAAGAATTTATAACCTTAAAAATGTAAAGAATGTGGAAAACCCTATAAATGTAAAAAATGTAGAAAAACCTTTATTTGTCTTAGTTTACTTGGAAACCATGAACAAACTCACACTGGAAAGCGACTTCTTAAATATAGACATTGTGAGAAAGCCTTCAGTTGGCCCACATACTAATATGTGAGAATGCAGACTGGATAGAAATCCTATAAAAGTGAGATATAGCAATGTTTTCCATTTTAACAAATGCTCATGTGATACTCCCTTATGTGTGAAACTTCAATCTCATGTTGAAACTCCCACTAGGGAGGTACTGTATAAATGTAGATAATATGGGAAAGCCTGATGCAAATTAATTCATGTATATTGTTCTAGAAAATTCACAACATGTCAGAAATGTGATAAAACATATTATCAGTTACTGATTCTTAAAATGGATCTCTGAATTATGGATTTCTATTACTTTCACAAAAGAACACTGAGATGAGATAATTCTGTAAGCTCTTATACAGTTGTACACAAGTTGAATTGATAGTATTTTTTCATTAAATCAGTTTCTGAAATTTTGTCTTTCCATATTGAAGTCTGTTAGATTCATGAGTGAATTGAAGTGTATTTATAATAAGCTAGCAGTTTTGATTTTTATGTATTTTTTAGTTGTGCTGTAATGGGCCATCAAAAAATGACAATTTGGTAATTTTTAGGATTTCCTACTGGCCTTATGTGGCAGGTACTAGATATCATTATATGTATTTCATCTTTCTGACCAAAAGAGGCTTTTTTAGAGGAAGACAGAGTACCCTTTTTTCTATTTTTTATGCTAAAAAATAATCATAATAAATTTTTGAGTCTGCAAAGTTTATCATACAGTATACTCTCTCATTGGAATTATTATTTTCATCTTCTGTTTGCTGTTTGTAATTCCTTCTGGCTGTGATTTGAATAATAGACTTTGTATTAATAAGAGAGATCTGAGATAGAACCATATAACCTATAGCTGGAAATGGCTGTCCTGGATTGTGTTAACATGGGTTATGTTGTGACCTATGTTTTCTATAATCTAACCTTTTATGGCTCCACGGTATAATTCACCAATAGCCTACTTGCAGGAGATATGGAAGGCAGAAGTGAAGAAAGCATTAGTCAGGTTTTATAGCCACCATATGTGGAGACAGATGGATGCATAGGAGCTTCAGGGACACCTGCTTCCACCACATTGTCCTGATCCTTTGCTCTGCCAATTGAGAGTATTCTTAGAACCACCACTAACTGCTTGACTGCCATATTTTCCTTCCTTCCTTCCTTCTTTCTTTCCCTTTCCCTTTCTTTTCTTTCTTTACTTTCTTTTTCCGAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTACGATCTTGGCTCACTGCAACCTCTGCCTTCTGGGTTCAAGCAATTGTCCTGCCCCAGCCTCCCAAGTAGCTGGGATTATAGGTGCCCACCACCAAGCCCAGCTAAATTTTTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCATGATCTGCCCACCTTGGCCTTCCAAAGTGCTGAGATTACAGGCGTGAGCCACTGTGCATGGCCCCAGCTGCCATATTTTCAAAGATGTAGTTTTCCACAAATTGTCTTCAAAAGTTCTACTCAAAGATGCACTGCAGTTTGGATTTTCCTAGAAACTCTAATGTGTCCACCAGGCAACCATTTAGACTCTTAAGGTTGGGAATATTCTCTGATGCTCTGACTCACCTCATCTCTAGGTTGAATTTATCCAAGGTATTATTTATGTAATAAACACCATGTTTTGTTAACAGTACCAGTGACTATGTGTTTCTGATTCCACCGTGACAACTACAGTGGTGCAGTCAAAAAGAACTACATGGGTGTCTGCTTCTCCACTGCACTGTGCAGGGAATGCACTTACCCAGTCCTACAGTGTAAGAATAAGCACCTTCCTAATATCAAGCAGATTGTCGGTGTTTCCTATTACAGTTGAATGTCATCTCTCAGTACATTTTCAATTTTGTTTCATTATATGTGATTAAAAACCATGTGTATGTTTTTGTTGAACAAAAGCTTCTGTAGATGTTTCTTAGAAATATTTTATTAACTTTTCAAATAACTTGTATGCTATCACTTGTCTATTTAATTTTCTGCAAGGATATATTAAAATATTCCATTGCAATTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000242852:ENST00000397732:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACAAAAATCAGGGGAGAAAGCT
R:
AGGGTTTCTCTCCAGTGTGAGT
Band lengths:
342-1070
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains